Comments (2)
CrawlingSponge
commented on June 7, 2024
as we konw, the intron length of mammal genomes is very long, and the gene structure of mammal genomes with premature codons, which made the prediction always less then its real gene length, so i just wonder if the GeMOma has the parameters to limit the max length of intron or other gene sturctures?
from jstacs.
JensKeilwagen
commented on June 7, 2024
see #18
from jstacs.
Related Issues (20)
- usage about the parameter of weight (w) HOT 4
- amino acid J found in input HOT 1
- GeMoMa Extractor Error: There are gene annotations on chromosomes/contigs with missing reference sequence HOT 2
- java.lang.IllegalArgumentException: At least two sequences with the same ID but different sequence: HOT 5
- Using RNA-seq from closely-related organism HOT 2
- GeMoMa expected runtime HOT 2
- How does GeMoMa treat masked nucleotides? HOT 1
- Problem when adding external evidence HOT 5
- cdsParts=true, but the ID (gene-si: )seems to be no CDS part HOT 1
- AnnotationFinalizer for renaming genes and transcripts HOT 2
- Exception in thread "main" java.lang.NullPointerException HOT 2
- Why does GeMoma annotationfianlizer remove the exon features ? HOT 1
- Could not open GeMoMa_temp/GeMoMaPipeline-9364982901453846136/mmseqsdb_h.index.5 for writing! HOT 2
- java.lang.OutOfMemoryError: Java heap space when using GeMoma HOT 21
- java.lang.InterruptedException HOT 1
- Use GeMoma with protein as reference, the result showed no predicted_proteins.fasta and final_annotation.gff HOT 13
- Result filtering HOT 4
- GeMoMa error HOT 8
- No gene model was extracted from the references. HOT 3
- GeMoMa gives me multiple genes with exact same coordinates HOT 6
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from jstacs.