Comments (7)
Minimal working example:
set.seed(
1,
kind = "Mersenne-Twister",
normal.kind = "Inversion",
sample.kind = "Rejection"
)
daisie_mainland_data <- DAISIEmainland::sim_island_with_mainland(
total_time = 1,
m = 100,
island_pars = c(1.0, 0.5, 10, 0.1, 0.5),
mainland_ex = 2,
mainland_sample_prob = 1,
mainland_sample_type = "complete",
replicates = 1,
verbose = FALSE
)
DAISIEmainland::plot_daisie_mainland_data(
daisie_mainland_data = daisie_mainland_data,
replicate_index = 1
)
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Potentially a second bug in plot_daisie_mainland_data
. In this example the ideal data should plot a recolonisation, but only plots one of the species from the all_colonisations
.
set.seed(
1,
kind = "Mersenne-Twister",
normal.kind = "Inversion",
sample.kind = "Rejection"
)
daisie_mainland_data <- DAISIEmainland::sim_island_with_mainland(
total_time = 1,
m = 50,
island_pars = c(1.0, 0.5, 10, 0.1, 0.5),
mainland_ex = 2,
mainland_sample_prob = 1,
mainland_sample_type = "complete",
replicates = 1,
verbose = FALSE
)
DAISIEmainland::plot_daisie_mainland_data(
daisie_mainland_data = daisie_mainland_data,
replicate_index = 1
)
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@joshwlambert thanks for the bug reports! I will fix this tonight.
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Moved the first part of the Isse to #64.
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Hence, this can be closed :-)
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Related Issues (20)
- Remove link to Tidyverse coding standard? HOT 1
- Write read_results function
- change plotting functions to use results and not read the results in the plotting function
- Finish plot_island_tbl on tree_plots branch HOT 7
- fix the build on fix_check branch HOT 1
- Check whether island_to_table, ideal_island_to_table and empirical_island_to_table can be deleted
- add labels argument to plots
- Write function to create `ideal_island_tbl` and `emperical_island_tbl` from `island_tbl` HOT 6
- Resurrect island_to_tables and daisie_data_to_tables for V2? HOT 3
- add tidyverse style check to tests HOT 1
- Add `plot_daisie_mainland_data` HOT 4
- Color clades based on stac_str HOT 1
- Changing `plot_mainland` x-axis to time before present HOT 8
- plot_daisie_mainland_data: reverse time axis HOT 5
- Plot all recolonisations in 'plot_daisie_mainland_data' HOT 23
- Plot branches connected correctly by `plot_daisie_data` HOT 5
- No branching for colonist that underwent anagenesis? HOT 2
- Numerical integrator use HOT 1
- Island plot legend HOT 1
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