joshuamschmidt Goto Github PK

3p-clr

acne

nf pipeline for CNV analysis of genotype array data

admixtools

ancestral_chimp_selection

repository of analyses for ancestral central-eastern chimp selection project

automitoc

Automatic Mitochondrial DNA Copy Number (mtDNA-CN) Pipeline to infer mtDNA-CN from SNP array intensities

conda_yamls

place to store and version control my conda environments

configs

Config files used to define parameters specific to compute environments at different Institutions

deml

Maximum likelihood demultiplexing

devnotes

Vince Buffalo's devnotes — ½ TIL, ½ notebook

ff_2022

power analysis for Flinders Foundation Grant 2022

ge_panelapptools

basic tools to query the Genomics England Panel App

glaucoma-treatment-work

greatapebalsel

hdl

High-definition likelihood inference of genetic correlations (HDL)

mt-wes-cnv

simple pipeline for estimating relative mtDNA copy number from off Target WES reads

phisweepr

Rcpp implementation of Vy and Kim 2015

prspower

Example code to simulate PRS in a population cohort and check its predictive power

set_perm

Permutation based gene set tests, inspired by but extending functionality of GOWINDA

simple-fst

Perl scripts to calculate per snp FST

smartsnp

wescnv

A workflow for discovering CNV from whole exome sequencing data