srametadata is an R package for getting metadata from Sequence Read Archive (SRA)
devtools::install_github("joseah/srametadata")Package can be loaded into R as follows:
library('srametadata')Example: Get fastq urls from SRA.
library('srametadata')
# Get sqlite database
download_sra_db()
# Get path to sqlite database
sqlfile <- file.path('.', 'SRAmetadb.sqlite')
# Create connection
conn <- dbConnect(SQLite(),sqlfile)
# one file, two files and three files associated with corresponding run accessions
get_fastq_urls(runacc = c("DRR001482", "DRR001627", "ERR204978"),
db_con = conn)Report bugs and issues on this Repository
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