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License: GNU General Public License v3.0
The script presents a simple way to visualize features on human chromosome ideograms
License: GNU General Public License v3.0
Hi,
I was wondering if is it possible to optimize this amazing tool for other genomes. not only on the human genome.
Best,
PF
Hi, thank you for developing this tool, super useful. Just wondering if it's possible to add legend function? Thanks!
I think the X vs. XX vs. XY plotting will need to be controlled by the input bed, and possibly throw a warning (but probably not error out) if XXY karyotype is implied.
Thanks for this library.
I'd be interested in using the tagore to create some graphics.
I'd like to add legends for the color.
Also, if I'm not interested in say certain chromosome (say ChrX), I'd like to remove that.
Are these two things possible?
Thanks.
getting:
Could not find rsvg
in PATH.
I have libsvg installed, it seems to want to call rsvg-convert instead of just rsvg
any suggestions?
thanks,
Hello,
I did:
pip install tagore --user
This puts tagore in ~/.local/bin
.
Running it I got a following error:
Could not open /usr/lib/tagore-data/base.svg.p. Please reinstall tagore
Traceback (most recent call last):
File "/home/darked89/.local/bin/tagore", line 242, in <module>
raise base_e
File "/home/darked89/.local/bin/tagore", line 239, in <module>
BASE = open(BASE_PATH, 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/tagore-data/base.svg.p'
But I do have the missing file in my home dir installation:
$HOME/.local/lib/tagore-data/base.svg.p
IMHO it is a bug since not on all systems we have root/sudo and moving bed files back and forth can be quite cumbersome.
Hope it helps,
Darek Kedra
EDIT
BTW, the system wide install puts the file in question here: /usr/local/lib/tagore-data/base.svg.p
I installed tagore & librsvg2 on google colab and got:
Could not open /usr/lib/tagore-data/base.svg.p. Please reinstall tagore
Traceback (most recent call last):
File "/usr/local/bin/tagore", line 242, in
raise base_e
File "/usr/local/bin/tagore", line 239, in
BASE = open(BASE_PATH, 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/tagore-data/base.svg.p'.
Folder /usr/lib/tagore-data/ does not exist.
Reinstallation doesn't help.
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