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nvcc-feedstock

A conda-smithy repository for nvcc.

odin-dust-plots

Code to recreate plots in 'Reproducible parallel inference and simulation of stochastic state space models using odin, dust, and mcstate'

one_hundred_lines

Activity for 100 lines of code

paired-samples

Scripts and plots used for 'Large scale genomic analysis shows no evidence for pathogen adaptation between the blood and cerebrospinal fluid niches during bacterial meningitis'

pairsnp-cpp

pbwt

Implementation of Positional Burrows-Wheeler Transform for genetic data

pilus-age

Association between pilus and age in the Maela dataset

pmcmc

Parallel implementation of MCMC using MPI - coded by Hákon Jónsson, John Lees and Tobias Madsen

pneumo_core

Scripts to get some population genetics stats about core genes of S. pneumoniae

poppunk-scripts

Scripts used to help produce extra analysis for the PopPUNK manuscript

poppunk-web

Web version of PopPUNK

poppunk_galaxy

Galaxy tool for PopPUNK

pp-sketchlib-feedstock

A conda-smithy repository for pp-sketchlib.

pyseer

SEER, reimplemented in python

r_plots

Some scripts to create plots in R

rapidnj

Code for rapidNJ by Martin Simonsen, Thomas Mailund and Christian N. S. Pedersen.

saphy

Sequential analysis of phylogenies

sdsl-lite-feedstock

A conda-smithy repository for sdsl-lite.

seer

sequence element (kmer) enrichment analysis

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

subtest

A package for testing for differential genetic basis between two putative disease subtypes

tajima-d

calculates tajima's D from bcftools query input

transmission_blp

Code for plots and simulations related to loss of diversity in S. pnuemoniae

warpedlmm

which_tree

Testing of phylogenetic inference methods