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Name: Johan Zicola
Type: User
Company: University of Göttingen
Bio: Plant molecular biologist writing tools in R/Python/Bash/ImageJ
Location: Göttingen, Germany
Name: Johan Zicola
Type: User
Company: University of Göttingen
Bio: Plant molecular biologist writing tools in R/Python/Bash/ImageJ
Location: Göttingen, Germany
Step by step to generate CRISPR-Cas9 transgenic lines in Arabidopsis thaliana with useful scripts to facilitate primer design
A suite of tools to generate random or mapped fastq files
GO term annotation of the maize B73 NAM5 assembly
Perform GWAS with gemma in a simple pipeline
JBrowse plugin for methylation related things
Generate pseudogenomes in fasta format for Arabidopsis accessions based on a VCF file.
How to use the NCBI ressources from the command line and not be lost in the NCBI huge documentation
Pipeline of the de novo transcriptome assembly of three larval stages of the oak processionary moth (OPM) (Thaumetopoea processionea)
Pipeline to perform phylogenetic shadowing based on VISTA tools.
If you find time consuming the transfer of mp3 music files from your PC to your mp3 player and you would like a quick selection of random songs for the day, this program is for you. This python script allows to select a defined number of mp3 files in a random and recursive manner and transfer them on the selected output directory. The program use the built-in Tkinter library to offer a GUI. It requires python2 to be installed on your computer and to click on the script file.
Pipeline to assess the number of rDNA copies from Arabidopsis thaliana based on short reads
RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
Pipeline for RNA-seq analysis
Perform segmentation of RGB images of Arabidopsis rosettes and calculate values of green and red to assess relative chlorophyll content. Provides also area of the rosettes.
Extended scripts and data from Zicola et al 2019
Pipeline for SNP calling using sequencing data from Arabidopsis thaliana
Split-read pipeline for the identification of non-reference TE insertions with TSDs
Contains scripts used to design and analyze small RNA spike-in oligonucleotides as described in Lutzmayer, Enugutti and Nodine (2017) Novel small RNA spike-in oligonucleotides enable absolute normalization of small RNA-Seq data, Scientific Reports
Scripts related to the paper Characterization of exosome-like vesicles from maize pollen and their potential role in sRNA trafficking
Generate summary (TOC) for an existing MD document.
Transposable element polymorphism identification
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.