joeldhartman / vartools Goto Github PK

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VARTOOLS astronomical time series analysis program

License: GNU General Public License v3.0

LiveScript 16.40% Makefile 6.58% C 54.71% Fortran 1.90% Shell 18.95% M4 1.44% Python 0.01% R 0.01%

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rcv-legado williamcfong laofei177 pierfra-rocci kirxkirx

vartools's Issues

Memory saturation with -binlc

Platform: Ubuntu 20.04.4 LTS on a Dell Precision 5560.
VARTOOLS version 1.40

When dealing with a large light curve such this one (~60,000 data points spread over ~4100 days):
https://drive.google.com/file/d/1bomxhVAsE_gLltK2bhWfmJXmewnuWil1/view?usp=sharing

the command

vartools -i test.dat -binlc average binsize 0.001 tcenter

quickly saturates >25 GB of free RAM and kills VARTOOLS with a "Killed" error message.

Memory Allocation Error when running -BLS command

Platform: MacOS Mojave 10.14.2
VARTOOLS version 1.36

When running the following command:

$ vartools -l /path/to/lc_list -ascii -oneline -BLS q 0.01 0.1 0.1 2.0 100000 200 -6 3 1 /path/to/outdir 1 /path/to/outdir 0 fittrap nobinnedrms ophcurve /path/to/outdir -0.1 1.1 0.001

I get the following output:

vartools(45112,0x10f7b75c0) malloc: can't allocate region
*** mach_vm_map(size=18446744073709465600) failed (error code=3)
vartools(45112,0x10f7b75c0) malloc: *** set a breakpoint in malloc_error_break to debug
Memory Allocation Error

I've tried this on multiple different data sets, doesn't seem to have any effect.

Running another command like -LS works just fine, seems to only affect -BLS.

I see that in version 1.35 a memory allocation error was fixed for the -BLS command, but this is version 1.36

Still new to this, I can provide any additional details if I need to.

vartools does not compile with gcc-10 and 11

Compilation works fine with gcc-8.3.0, but when compiling the same code with gcc-10.3.0 or gcc-11.1.0 I get the following linker errors:

libtool: link: gcc -g -O2 -o .libs/vartools vartools-alarm.o vartools-aov.o vartools-aov_harm.o vartools-amoeba.o vartools-analytic.o vartools-binlc.o vartools-binarylcio.o vartools-chi2rms.o vartools-copylc.o vartools-decorr.o vartools-detrendtfa.o vartools-doublelinklist.o vartools-error.o vartools-fluxtomag.o vartools-getampthresh.o vartools-ifelse.o vartools-initcommands.o vartools-inputoutput.o vartools-jstet.o vartools-killharm.o vartools-lombscargle.o vartools-main.o vartools-mrqmin.o vartools-mysort.o vartools-nonlinfit.o vartools-nr.o vartools-parsecommandline.o vartools-processcommand.o vartools-rescalesig.o vartools-runblsfixdurtc.o vartools-runblsfixper.o vartools-runbls_sn.o vartools-sigclip.o vartools-starspot.o vartools-statistics.o vartools-svdcmp.o vartools-sysrem.o vartools-transitmodel.o vartools-util.o vartools-transit.o vartools-GetBLSsignaltorednoise.o vartools-autocorrelation.o vartools-harmonicfilter.o vartools-injectharm.o vartools-dftclean.o vartools-injecttransit.o vartools-saverestorelc.o vartools-saverestorelistdata.o vartools-outcolumns.o vartools-medianfilter.o vartools-findblends.o vartools-microlens.o vartools-fittrap.o vartools-addnoise.o vartools-example.o vartools-parseinputlist.o vartools-parselc.o vartools-converttime.o vartools-userlib.o vartools-linfit.o vartools-help.o vartools-resample.o vartools-restricttimes.o vartools-mcmcfit.o vartools-wwz.o vartools-callrunpython.o vartools-callrunR.o vartools-fft.o  ./.libs/libvartools.so ./.libs/libvartoolsrunpython.so -lcfitsio /usr/lib64/libgsl.so /usr/lib64/libgslcblas.so -lpthread /home/kirx/spice/c/cspice/lib/cspice.a /usr/lib64/libltdl.so -lm -Wl,-rpath -Wl,/usr/local/share/vartools/USERLIBS
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-aov.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-aov_harm.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-amoeba.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-analytic.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-binlc.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-chi2rms.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-copylc.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-decorr.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-detrendtfa.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-error.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-fluxtomag.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-getampthresh.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-ifelse.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-initcommands.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-inputoutput.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-jstet.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-killharm.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-lombscargle.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-main.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-mrqmin.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-mysort.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-nonlinfit.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-nr.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-parsecommandline.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-processcommand.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-rescalesig.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-runblsfixdurtc.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-runblsfixper.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-runbls_sn.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-sigclip.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-starspot.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-statistics.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-sysrem.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-transitmodel.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-util.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-transit.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-GetBLSsignaltorednoise.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-autocorrelation.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-harmonicfilter.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-injectharm.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-dftclean.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-injecttransit.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-saverestorelc.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-saverestorelistdata.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-outcolumns.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-medianfilter.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-findblends.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-microlens.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-fittrap.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-addnoise.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-example.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-parseinputlist.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-parselc.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-converttime.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-userlib.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-linfit.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-help.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-resample.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-restricttimes.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-mcmcfit.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-wwz.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-callrunpython.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-callrunR.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: vartools-fft.o:/home/kirx/cod/vartools/src/programdata.h:92: multiple definition of `JDTOL'; vartools-alarm.o:/home/kirx/cod/vartools/src/programdata.h:92: first defined here
collect2: error: ld returned 1 exit status
make[2]: *** [Makefile:658: vartools] Error 1
make[2]: Leaving directory '/home/kirx/cod/vartools/src'
make[1]: *** [Makefile:793: all-recursive] Error 1
make[1]: Leaving directory '/home/kirx/cod/vartools'
make: *** [Makefile:679: all] Error 2

This same error appears for the latest github version and for the old stable release vartools-1.35. I haven't tested other combinations of vatrools and gcc versions.

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