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coevol

Library of scripts for coevolution analysis of protein sequences

msm_pele

Monte Carlo Protein Energy Landscape Exploration (PELE) coupled with Markov State Model (MSM) analysis with the aim to calculate absolute free energies

network-visualization

Protein interaction network analysis and heat map plotting (school exercise)

nexus

A protein analysis tool that queries different protein bank database websites.

paacman

Protein amino acid composition analysis = Paacman

paw

Protein Analysis Workflow

pdb_analysis

Python scipts to read PDB protein files and compute stuctural and thermodynamic properties.

pdb_energy_analysis

Interactive Tool-set for Analysis of Energetic Changes caused by Protein Mutations

prody

A Python Package for Protein Dynamics Analysis

prolib

Scripts for protein and their cavity volume analysis

protein-analysis

protein-analysis-tool-

A tool that when provided with a target's protein sequence will provide biochemical information

protein-analysis-using-pytraj

Some miscellaneous scripts I made to do protein analysis using the pytraj library

protein-binding-pocket

3D Analysis of binding pockets of proteins

protein-data-analysis

Using various observed metrics such as amino acid residues, the program will try to predict factors of certian proteins

protein-hydrogen-bond-analysis

protein-structure-analysis

Analysis of protein secondary structure, Ramachandran plots, alignment and symmetry of proteins.

protein_structure_analysis

Sequence and Structure Database Creation and Analysis

proteinanalysis

Simple program for analyzing protein sequences

proteinseqanalysis

A python-based protein sequence analysis tool for unix command line.

pyasr

Ancestral Sequence Reconstruction in Python

pycanal

Conservation analysis of homologous proteins with Python

pymulticov

Python package for covariance analysis on alignments of biological sequences.

sequence-analysis

Programs for analyzing biological sequences such as DNA, RNA, and proteins.

sequenceconservation

b-column analysis for a given protein sequence -Roshan Ahmed, Kourosh Kouhmareh