This repository relates to SbD4Nano Task 2.1.1 "Library of comprehensive data on ENMs properties and bioactivities".
- create turtle files with metadata info of datasets, databases, models and data sources of safety knowledge
- keep manually added data in a separate files
- we'll extract automatically data and models from:
- Data sets
- FAIRSharing (API) (open data)
- Wikidata (SPARQL) (open data)
- NanoWiki (Studies, RelationShips): https://github.com/h2020-sbd4nano/sbd-data-aopwiki (private repo)
- AOPWiki: https://github.com/h2020-sbd4nano/sbd-data-aopwiki (private repo)
- Diamonds spreadsheet: https://github.com/h2020-sbd4nano/sbd-data-diamonds/ (private repo)
- Models
- JRC
- QSARDB
- NanoSolveIT / NanoInformaTIX
- SbD4Nano
- Deliverable D4.1
- Deliverable D1.1
- Data sets
- develop a SPARQL endpoint with SNORQL interface
- with a license that allows integration in the SbD4nano platform
- which tell me about NOEL, DNEL, or PNEC for a particular nanomaterial
- what is all knowledge about the safety of a partcular nanomaterial
The Turtle content can be validated according to the syntax with:
cat nanosafety_databases.ttl | rapper -i turtle -t -q - . > /dev/null
The Turtle content is also validated against shape expressions written in the ShEx standards. These can be found in the shapes/ folder.
We use SPARQL to summarize and visualize the collected data.
License information for data in this folder is provided in the VoID header files for that data.