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netgan

Implementation of the paper "NetGAN: Generating Graphs via Random Walks".

nf2-vcf

nf2_hackathon_teamedward

panhipmer_dev

pathflow-mixmatch

Don't mix, match! Simple utilities for improved registration of Histopathology Whole Slide Images.

pathflowai

A High-Throughput Workflow for Preprocessing, Deep Learning Analytics and Interpretation in Digital Pathology

pathpretrain

Tutorial for EDIT interns on basic components of PyTorch workflow. Can be used as quick script for pretraining image classification models / extracting features with traditional image folder classes, with focus in histology.

plotlypresentationdemo

polycracker-unofficial-mirror

A robust method for the unsupervised partitioning of polyploid subgenomes by signatures of repetitive DNA evolution https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-019-5828-5

preliminarygenerativehistopath

pymethylprocess

Preprocessing methylation pipeline, written in python. Easy to use and highly parallelized.

python_games

Making python games

pythonflask-jobboard

Build a Job Board with Python & Flask

pytorch_cluster

PyTorch Extension Library of Optimized Graph Cluster Algorithms

pytorch_geometric

Geometric Deep Learning Extension Library for PyTorch

pytorch_practice

Some practice scripts from earlier this year

qbs181_convenience2

qbs181_conveniencefunctions3

qbs181_convenientfunctions_test

satellitecountymortalityprediction

scaffolderpipeline

Highly parallelized scaffolder, turns scaffold level genomes into chromosomes via synteny

sharelatexprojects

simplehttpauthserver

Python SSL server using Basic auth and SimpleHTTP. extended and imported from gist: https://gist.github.com/fxsjy/5465353

submit-hpc

Growing list of submission scripts for HPC for quick hacking.

top2vec

Top2Vec learns jointly embedded topic, document and word vectors.

tutorials

unrealai

Exploring Fun and Useful AI Projects with Friends

util

Utility modules for Python

virtual_conference_template

💎 🐳 A super customizable Jekyll theme for personal site, team site, blog, project, documentation, etc.

wsi-gtfe

Topological Feature Extraction on Whole Slide Images using Graph Neural Networks.