This repository contains the functionality to standardize the Checklist of non-native freshwater fishes in Flanders, Belgium (Verreycken et al. 2018) to a Darwin Core checklist that can be harvested by GBIF. It was developed for the TrIAS project.
source data โ Darwin Core mapping script โ generated Darwin Core files
The repository structure is based on Cookiecutter Data Science and the Checklist recipe. Files and directories indicated with GENERATED
should not be edited manually.
โโโ README.md : Description of this repository
โโโ LICENSE : Repository license
โโโ alien-fishes-checklist.Rproj : RStudio project file
โโโ .gitignore : Files and directories to be ignored by git
โ
โโโ data
โ โโโ raw : Source data, input for mapping script
โ โโโ processed : Darwin Core output of mapping script GENERATED
โ
โโโ docs : Repository website GENERATED
โ
โโโ specifications : Data specifications for the Darwin Core files
โ
โโโ src
โโโ dwc_mapping.Rmd : Darwin Core mapping script, core functionality of this repository
โโโ _site.yml : Settings to build website in docs/
โโโ index.Rmd : Template for website homepage
- Clone this repository to your computer
- Open the RStudio project file
- Open the
dwc_mapping.Rmd
R Markdown file in RStudio - Install any required packages
- Click
Run > Run All
to generate the processed data - Alternatively, click
Build > Build website
to generate the processed data and build the website indocs/