jefferislab / lhns Goto Github PK
View Code? Open in Web Editor NEWA repository for neuron data related to the fly lateral horn
License: GNU General Public License v3.0
A repository for neuron data related to the fly lateral horn
License: GNU General Public License v3.0
id sex LH_side pnt anatomy.group cell.type coreLH good.trace dendritic.cable.in.lh dendritic.cable type
120714c4 120714c4 <NA> <NA> <NA> AD1b AD1b2 TRUE TRUE NA NA ON
140612c0 140612c0 <NA> <NA> AD1 AD1b AD1b2 TRUE TRUE NA NA ON
140616c0 140616c0 <NA> <NA> AD1 AD1b AD1b2 TRUE TRUE NA NA ON
lh.mcfo
still not documented – this is the last warning for the package.
> lhns::process_lhn_name(c("AV2d1", NA))
pnt anatomy.group cell.type
1 AV2 AV2d AV2d1
2 <NA> NANA <NA>
https://github.com/jefferislab/lhns/blob/master/README.md#installation
devtools::install("jefferislab/lhns")
should it be install_github
?
As discussed we need to settle on a better distribution mode for the content of this package. I think there are few basic options:
neuronlistfh
but store the objects remotely. This is what we did for the NBLAST paper. It works, there is versioning of the data objects (because the md5 hashes are embedded within the neuronlistfh
object) but it doesn't guarantee that the neuron data are actually there – the user needs to explicitly request the download and it can be a little slow.Hi, thanks for the nice work!!
I have tried to install the package with devtools as suggested, but I got the following error:
Using github PAT from envvar GITHUB_PAT
Downloading GitHub repo jefferislab/lhns@HEAD
Error in utils::download.file(url, path, method = method, quiet = quiet, :
download from 'https://api.github.com/repos/jefferislab/lhns/tarball/HEAD' failed
I did not find this issue with other packages, e.g. catnat.
Information on my R version, OS, etc:
Session info ───────────────────────────────────────────────────────────────────────────────────────
setting value
version R version 4.3.1 (2023-06-16 ucrt)
os Windows 11 x64 (build 22621)
system x86_64, mingw32
ui RStudio
rstudio 2023.06.1+524 Mountain Hydrangea (desktop)
> plot3d("fru-M-100206",db=most.lhns, soma=T)
> plot3d(FCWB)
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