bridging_on-the-fly's People
bridging_on-the-fly's Issues
Download SWC button does not appear after neuron has been bridged
Indicate type of files allowed
The 'Tracing' tab does not clearly state what type of files are allowed (nrrd, swc?). It would be good if this info was added.
For comparison, NBLAST online says:
Query
Your tracing (e.g. swc) or skeletonised neuron (nrrd file):
New tab About
The site is missing the tab About, that would, amongst other info, link back to
http://flybrain.mrc-lmb.cam.ac.uk/si/bridging/www/about/
(its repo currently private)
Reinstate download of bridged data
Need to think about where this should go on one-tab layout.
Rewrite using rglwidget
This is a maintained package available through CRAN that also has more functionality than shinyRGL
.
enable mirroring of neurons / coords
- Should that be in space of brain of origin?
- should work for same brain (i.e. just mirror, no bridge)
Change initial brain selection to "choose a brain"
And update end brain selection to match, by default.
Reinstate about
Add panel for bridging coordinates
enable surfaces as well as neurons
should mirror even within same brain
Handle bridging a ZIP file of many neurons
Add about panel
Add loading spinners
As in NBLAST on-the-fly, as the WebGL views take a while to load.
add use mean scores to upload a tracing?
this can be pretty helpful for some queries
Should we change the name to Bridging on-the-fly?
This would then match up better with https://github.com/jefferislab/NBLAST_online/.
should we putting this up sometime soon?
Not sure what's necessary in terms of infrastructure. Did Jake/Toby say anything about DMZ hardware upgrade?
Downloading transformed neuron when a ZIP of many neurons is uploaded fails
We need to add some logic to see if write.neurons
should be called instead of write.neuron
. It would also be good if we could add some logic to ensure that the neurons are written in the same format as the ones that were originally uploaded.
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