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This repository corresponds to the study: Cornwall et al. (2023). Increasing importance of crustose coralline algae to coral reef carbonate production under ongoing climate change. Communication Earth & Environment

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cca_methods's Introduction

Increasing importance of crustose coralline algae to coral reef carbonate production under ongoing climate change

Scripts and data for Increasing importance of crustose coralline algae to coral reef carbonate production under ongoing climate change This Github repository is structured as follows:

📁 R contains the current script and R project related to this study
- The script to provide the raw figure is CCA_Calcification_Rates
- The script to generate the data from the systematic review is Systematic_Review_CCA
📁 data contains the following sub-folders
📁 models which hosts the models built with this script
📁 figures which hosts the figures for this study
- 📁 raw figures which hosts the raw plots built with this script
- 📁 main figures for journal which hosts the figures edited for publication

This analyze has been launched with the following machine parameters

R version 4.2.1 (2022-06-23)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS Monterey 12.2.1

Matrix products: default
LAPACK: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] rsvg_2.4.0         brms_2.18.0        Rcpp_1.0.9         readxl_1.4.1      
 [5] Matrix_1.5-1       ggimage_0.3.1      viridis_0.6.2      ggridges_0.5.4    
 [9] pkgconfig_2.0.3    forcats_0.5.2      stringr_1.4.1      dplyr_1.0.10      
[13] purrr_0.3.5        readr_2.1.3        tidyr_1.2.1        tibble_3.1.8      
[17] tidyverse_1.3.2    posterior_1.3.1    patchwork_1.1.2    tidybayes_3.0.2   
[21] hrbrthemes_0.8.0   viridisLite_0.4.1  geomtextpath_0.1.1 ggplot2_3.4.0

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