A toolbox for specie distribution modelling in Maxent
In order to keep track of your github repositories on your computer, it is recommended to store them in a checkouts folder in your home folder.
mkdir ~/checkouts
cd ~/checkouts
git clone https://github.com/janjaapmeijer/sdm-toolbox sdm-toolbox
conda env create --file conda-environment.yml
conda activate sdm-toolbox
Bioclim dataset
wget -P ~/checkouts/sdm-toolbox/data https://geodata.ucdavis.edu/climate/worldclim/2_1/base/wc2.1_10m_bio.zip
unzip ~/checkouts/sdm-toolbox/data/wc2.1_10m_bio.zip -d ~/checkouts/sdm-toolbox/data/worldclim
Topography dataset
wget -P ~/checkouts/sdm-toolbox/data https://geodata.ucdavis.edu/climate/worldclim/2_1/base/wc2.1_10m_elev.zip
unzip ~/checkouts/sdm-toolbox/data/wc2.1_10m_elev.zip -d ~/checkouts/sdm-toolbox/data/worldclim
Land Cover/ Forest Type dataset
wget https://zenodo.org/records/3939050/files/PROBAV_LC100_global_v3.0.1_2019-nrt_Forest-Type-layer_EPSG-4326.tif -P ~/checkouts/sdm-toolbox/data/land-cover/
Planted Forest East Asia data dataset from Abbasi et al. 2023
mkdir ~/checkouts/sdm-toolbox/data/planted-forest-east-asia
wget https://figshare.com/ndownloader/files/41222433 -O ~/checkouts/sdm-toolbox/data/planted-forest-east-asia/PlantedForestEastAsia.shp
wget https://figshare.com/ndownloader/files/41222436 -O ~/checkouts/sdm-toolbox/data/planted-forest-east-asia/PlantedForestEastAsia.shx
wget https://figshare.com/ndownloader/files/41222439 -O ~/checkouts/sdm-toolbox/data/planted-forest-east-asia/PlantedForestEastAsia.prj
wget https://figshare.com/ndownloader/files/41222430 -O ~/checkouts/sdm-toolbox/data/planted-forest-east-asia/PlantedForestEastAsia.dbf
cd ~/checkouts/sdm-toolbox/data/planted-forest-east-asia
zip planted-forest-east-asia.zip *
Normalised Difference Vegetation Index dataset
wget https://land.copernicus.vgt.vito.be/PDF/datapool/Vegetation/Indicators/NDVI_Statistics/1999/12/21/NDVI-LTS_1999-2019-1221_GLOBE_VGT-PROBAV_V3.0.1/c_gls_NDVI-LTS_1999-2019-1221_GLOBE_VGT-PROBAV_V3.0.1.nc -P ~/checkouts/sdm-toolbox/data/ndvi
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