Protocol:
- Run
generated_synthetic_models.ipynb
- Run
cobra2tellurium.py
- Run
filtering_synthetic_models.ipynb
- Run
generated_model_data.ipynb
- Edit
run_inference_pipeline.py
and then run in the terminal
Data Omission Codes
Code | Data Type Omitted |
---|---|
A | None |
B | fluxes |
C | enzyme levels |
D | internal metabolite concentrations |
E | external metabolite concentrations |