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gophercises

indexrunner

Index Runner for KBase Search

interproscan_sdk

This module contains the SDK wrap of the InterProScan annotation pipeline

jamesjeffryes.github.io

Data for jamesgjeffryes.com. Includes customization of Bootstrap 3.0. Blog and pages generated by Jekyll. Hosted on GitHub.

jgi_gateway

JGI Gateway Service to sit between KBase and a JGI service

kb_assembly_compare

kb_ballgown

http://bioconductor.org/packages/release/bioc/html/ballgown.html

kb_blast

BLAST+ implementation for KBase

kb_cummerbund

kb_cutadapt

KBase wrapper for the cutadapt tool

kb_deseq

Module for running the DESeq2 application (https://www.bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html)

kb_fastqc

kb_functional_enrichment_1

kb_genomeindexer

Genome Indexer Module

kb_hisat2

Module for running the HISAT2 application (http://ccb.jhu.edu/software/hisat2/index.shtml)

kb_kaiju

kb_ke_apps

kb_kover_amr

Antimicrobial resistance prediction app for KBase

kb_masurca

This KBase app wraps the genome assembly software MaSuRCA(Maryland Super-Read Celera Assembler)

kb_maxbin

kb_megahit

KBase module for running the MEGAHIT assembler

kbapi_common

kbase-sbmltools

kbase-ui-plugin-catalog

kbase-ui-plugin-dataview

kbasereport

experiments with a report data type for the kbase sdk

kbasernaseq

kbasesearchengine

kbontologies

kbparallel

prototype module for parallel job execution for KBase