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[jseiler@sstar001 densgrid]$ valgrind --leak-check=yes ./densgrid 128 /lustre/projects/p004_swin/bsmith/1.6Gpc/means/halo_1721673/dm_gadget/data/snapdir_000/snapshot_000 /lustre/
==20402== Memcheck, a memory error detector
==20402== Copyright (C) 2002-2012, and GNU GPL'd, by Julian Seward et al.
==20402== Using Valgrind-3.8.1 and LibVEX; rerun with -h for copyright info
==20402== Command: ./densgrid 128 /lustre/projects/p004_swin/bsmith/1.6Gpc/means/halo_1721673/dm_gadget/data/snapdir_000/snapshot_000 /lustre/
==20402==
==================================================
Running with a GridSize 128, input file base /lustre/projects/p004_swin/bsmith/1.6Gpc/means/halo_1721673/dm_gadget/data/snapdir_000/snapshot_000 and output file base /lustre/
==================================================

Reading header from file /lustre/projects/p004_swin/bsmith/1.6Gpc/means/halo_1721673/dm_gadget/data/snapdir_000/snapshot_000.0.hdf5
==20402== Invalid write of size 8
==20402==    at 0x53A81DC: H5S_extent_get_dims (in /usr/local/x86_64/gnu/hdf5-1.8.9/lib/libhdf5.so.7.0.3)
==20402==    by 0x53A824C: H5S_get_simple_extent_dims (in /usr/local/x86_64/gnu/hdf5-1.8.9/lib/libhdf5.so.7.0.3)
==20402==    by 0x404509: read_attribute_int (io_hdf5.c:1153)
==20402==    by 0x401675: read_header (io.c:30)
==20402==    by 0x401921: get_numfiles (io.c:72)
==20402==    by 0x4012BC: init (main.c:62)
==20402==    by 0x4012F0: main (main.c:72)
==20402==  Address 0x57d9ee0 is 0 bytes inside a block of size 4 alloc'd
==20402==    at 0x4A06A2E: malloc (vg_replace_malloc.c:270)
==20402==    by 0x4044BA: read_attribute_int (io_hdf5.c:1148)
==20402==    by 0x401675: read_header (io.c:30)
==20402==    by 0x401921: get_numfiles (io.c:72)
==20402==    by 0x4012BC: init (main.c:62)
==20402==    by 0x4012F0: main (main.c:72)
==20402==
==20402== Invalid write of size 8
==20402==    at 0x53A81DC: H5S_extent_get_dims (in /usr/local/x86_64/gnu/hdf5-1.8.9/lib/libhdf5.so.7.0.3)
==20402==    by 0x53A824C: H5S_get_simple_extent_dims (in /usr/local/x86_64/gnu/hdf5-1.8.9/lib/libhdf5.so.7.0.3)
==20402==    by 0x404509: read_attribute_int (io_hdf5.c:1153)
==20402==    by 0x401696: read_header (io.c:31)
==20402==    by 0x401921: get_numfiles (io.c:72)
==20402==    by 0x4012BC: init (main.c:62)
==20402==    by 0x4012F0: main (main.c:72)
==20402==  Address 0x585b3d0 is 0 bytes inside a block of size 4 alloc'd
==20402==    at 0x4A06A2E: malloc (vg_replace_malloc.c:270)
==20402==    by 0x4044BA: read_attribute_int (io_hdf5.c:1148)
==20402==    by 0x401696: read_header (io.c:31)
==20402==    by 0x401921: get_numfiles (io.c:72)
==20402==    by 0x4012BC: init (main.c:62)
==20402==    by 0x4012F0: main (main.c:72)
==20402==  Address 0x585b3d0 is 0 bytes inside a block of size 4 alloc'd
==20402==    at 0x4A06A2E: malloc (vg_replace_malloc.c:270)
==20402==    by 0x4044BA: read_attribute_int (io_hdf5.c:1148)
==20402==    by 0x401696: read_header (io.c:31)
==20402==    by 0x401921: get_numfiles (io.c:72)
==20402==    by 0x4012BC: init (main.c:62)
==20402==    by 0x4012F0: main (main.c:72)
==20402==
==20402== Invalid write of size 8
==20402==    at 0x53A81DC: H5S_extent_get_dims (in /usr/local/x86_64/gnu/hdf5-1.8.9/lib/libhdf5.so.7.0.3)
==20402==    by 0x53A824C: H5S_get_simple_extent_dims (in /usr/local/x86_64/gnu/hdf5-1.8.9/lib/libhdf5.so.7.0.3)
==20402==    by 0x404509: read_attribute_int (io_hdf5.c:1153)
==20402==    by 0x4016B7: read_header (io.c:32)
==20402==    by 0x401921: get_numfiles (io.c:72)
==20402==    by 0x4012BC: init (main.c:62)
==20402==    by 0x4012F0: main (main.c:72)
==20402==  Address 0x58dc4f0 is 0 bytes inside a block of size 4 alloc'd
==20402==    at 0x4A06A2E: malloc (vg_replace_malloc.c:270)
==20402==    by 0x4044BA: read_attribute_int (io_hdf5.c:1148)
==20402==    by 0x4016B7: read_header (io.c:32)
==20402==    by 0x401921: get_numfiles (io.c:72)
==20402==    by 0x4012BC: init (main.c:62)
==20402==    by 0x4012F0: main (main.c:72)
==20402==
==20402== Invalid write of size 8
==20402==    at 0x53A81DC: H5S_extent_get_dims (in /usr/local/x86_64/gnu/hdf5-1.8.9/lib/libhdf5.so.7.0.3)
==20402==    by 0x53A824C: H5S_get_simple_extent_dims (in /usr/local/x86_64/gnu/hdf5-1.8.9/lib/libhdf5.so.7.0.3)
==20402==    by 0x403F5E: read_attribute_double (io_hdf5.c:1000)
==20402==    by 0x4016FC: read_header (io.c:35)
==20402==    by 0x401921: get_numfiles (io.c:72)
==20402==    by 0x4012BC: init (main.c:62)
==20402==    by 0x4012F0: main (main.c:72)
==20402==  Address 0x59df140 is 0 bytes inside a block of size 4 alloc'd
==20402==    at 0x4A06A2E: malloc (vg_replace_malloc.c:270)
==20402==    by 0x403F0F: read_attribute_double (io_hdf5.c:995)
==20402==    by 0x4016FC: read_header (io.c:35)
==20402==    by 0x401921: get_numfiles (io.c:72)
==20402==    by 0x4012BC: init (main.c:62)
==20402==    by 0x4012F0: main (main.c:72)
==20402==
We are reading from 256 files
==20402==
==20402== HEAP SUMMARY:
==20402==     in use at exit: 0 bytes in 0 blocks
==20402==   total heap usage: 2,394 allocs, 2,394 frees, 75,235,044 bytes allocated
==20402==
==20402== All heap blocks were freed -- no leaks are possible
==20402==
==20402== For counts of detected and suppressed errors, rerun with: -v
==20402== ERROR SUMMARY: 4 errors from 4 contexts (suppressed: 8 from 6)