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ssl_baselines_for_biosignal_feature_extraction's Introduction

SSL Baselines for Biosignal Feature Extraction

Implementations of various published works on self-supervised learning approaches to biosignal feature extraction.

References:

Requirements:

  • Pytorch (and dependencies)
  • CUDA
  • Currently only tested on Windows 10 OS with NVIDIA GPU and Pytorch (therefore any models/pipelines reliant on LSTMs/GRUs have not been fully tested - see pytorch/pytorch#27837)

File Descriptions:

Important Files:

  • README.md
  • data_utils.py
  • models.py
  • data_loaders.py
  • train.py

data_utils.py

  • list_training_files
  • extract_data
  • create_windowed_dataset

models.py

  • Stager_net_practice
  • Embedders for RP, TS, CPC
  • Downstream classifier model
  • PhaseSwap FCN Embedder and Upstream Decoder
  • SeqCLR Embedders (Convolutional and Recurrent) as well as Upstream Decoder (though currently the PhaseSwap FCN Embedder and Upstream Decoder - slightly modified - architectures are being used due to limited computational resources)

data_loaders.py

  • data loading function for training RP, TS, CPC, PhaseSwap, and SeqCLR tasks
  • data loading function for downstream task

train.py

  • upstream training functions
  • downstream training (with cross-validation)

To-Do's

(last updated 02/06/2021)

  • Define/Implement necessary NN models, data preprocessing/loading, upstream training loops, and downstream training loops for TIDNet

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