Detecting somatic mutations and predicting tumor-specific neo-antigens
******************** Software Information ***********************************
Version: Tumor_Specific_NeoAntigen_Detector 2.0
Python Version: 2.7.11
Finish time: April, 2016.
Developer: Zhan Zhou, Xingzheng Lyu, Jingcheng Wu
Copyright (C) 2015-2017 - College of Pharmaceutical Sciences,
Zhejiang University - All Rights Reserved
Cite: Zhou Z, Lyu X, Wu J, Yang X, Wu S, Zhou J, Gu X, Su Z, Chen S. TSNAD: an integrated software
for cancer somatic mutation and tumor-specific neoantigen detection. R Soc Open Sci. 2017, 4: 170050.
(1) After unzipping the software, enter into TSNAD folder and give execution
rights to TSNAD.
Commands:
cd [TSNAD_path]
chmod +x TSNAD
(2) If loading shared libraries errors occurs, please let your system find
the external dynamic link libraries located in dependencies folder.
You can add dependencies path (~/SMD/dependencies/) in the last of
ld.so.config. Then let changes come into effect.
Commands:
chmod a+w /etc/ld.so.config
vim /etc/ld.so.config
/sbin/ldconfig
(3) If you get the error “/usr/lib/x86_64-linux-gnu/libstdc++.so.6: version
'GLIBCXX_3.4.21' not found”, you need update your gcc.
Commands:
sudo apt-get install gcc