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TSNAD

Detecting somatic mutations and predicting tumor-specific neo-antigens

******************** Software Information ***********************************
Version: Tumor_Specific_NeoAntigen_Detector 2.0
Python Version: 2.7.11
Finish time: April, 2016.
Developer: Zhan Zhou, Xingzheng Lyu, Jingcheng Wu
Copyright (C) 2015-2017 - College of Pharmaceutical Sciences, 
           Zhejiang University - All Rights Reserved 
Cite: Zhou Z, Lyu X, Wu J, Yang X, Wu S, Zhou J, Gu X, Su Z, Chen S. TSNAD: an integrated software 
for cancer somatic mutation and tumor-specific neoantigen detection. R Soc Open Sci. 2017, 4: 170050.

How to run TSNAD

(1) After unzipping the software, enter into TSNAD folder and give execution 
   rights to TSNAD.
   Commands:
         cd [TSNAD_path]
         chmod +x TSNAD
(2) If loading shared libraries errors occurs, please let your system find 
   the external dynamic link libraries located in dependencies folder. 
   You can add dependencies path (~/SMD/dependencies/) in the last of 
   ld.so.config. Then let changes come into effect.
   Commands:
         chmod a+w /etc/ld.so.config
         vim /etc/ld.so.config
         /sbin/ldconfig
(3) If you get the error “/usr/lib/x86_64-linux-gnu/libstdc++.so.6: version
   'GLIBCXX_3.4.21' not found”, you need update your gcc.
   Commands:
         sudo apt-get install gcc

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