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notes_on_chm's Introduction

notes_on_CHM

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/scratch/trueba/CHM/chm-compiled-r2013a-2.1.367

1. How to load:

module load MCR/R2013a

export LD_LIBRARY_PATH=/g/easybuild/x86_64/CentOS/7/haswell/software/MCR/R2013a/v81/bin/glnxa64:/g/easybuild/x86_64/CentOS/7/haswell/software/MCR/R2013a/v81/sys/opengl/lib/glnxa64:/g/easybuild/x86_64/CentOS/7/haswell/software/MCR/R2013a/v81/sys/os/glnxa64:/g/easybuild/x86_64/CentOS/7/haswell/software/MCR/R2013a/v81/runtime/glnxa64

export PATH=/g/easybuild/x86_64/CentOS/7/haswell/software/MCR/R2013a/v81/bin:$PATH

toy example:

bash CHM_train.sh /scratch/trueba/yeast/mitochondria/raw /scratch/trueba/yeast/mitochondria/label

Obs. All training images must have the same size

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