The Brain Connectivity Toolbox (brain-connectivity-toolbox.net) is a MATLAB toolbox for complex-network analysis of structural and functional brain-connectivity data sets.

Complex network measures of brain connectivity: Uses and interpretations. Rubinov M, Sporns O (2010) NeuroImage 52:1059-69.

Author: Franco Pestilli The University of Texas at Austin

The Brain Connectivity Toolbox codebase is widely used by brain-imaging researchers, and has been ported to, included in, or modified in, the following projects:

bctpy: Brain Connectivity Toolbox for Python. bct-cpp: Brain Connectivity Toolbox in C++. Human Connectome Project: An NIH consortium for mapping brain white-matter pathways. Virtual Brain Project: A consortium for simulation of primate brain-network dynamics. FieldTrip: Advanced analysis toolbox of MEG, EEG, and invasive electrophysiological data. CONN: Cross-platform software for the computation, display, and analysis of fcMRI data. GraphVar: A user-friendly GUI-based toolbox for graph-analyses of brain connectivity. Network Based Statistic Toolbox: A toolbox for testing hypotheses about the connectome. Neuroimaging Analysis Kit: A library of modules and pipelines for fMRI processing. Graph Theory GLM Toolbox: A GLM toolbox of brain-network graph-analysis properties. Brainnetome Toolkit: A MATLAB GUI toolkit of complex network measures. BioNeCT: A cohesive platform for analyzing brain network connectivity in EEG recordings. GRETNA: A toolbox for comprehensive analyses of topology of the brain connectome. MIBCA: Automated all-in-one connectivity toolbox with batch processing. GAT/bnets: Graph Analysis Toolbox of functional and structural brain networks. BASCO: Inter-regional functional connectivity analysis in event-related fMRI data. MNET: A fully automated all-in-one network analysis toolbox for fMRI and DTI. EEGNET: A toolbox for analyzing and visualizing M/EEG connectivity. BRAPH: Brain analysis using graph theory. FastFC: Efficient computation of functional brain networks.