use pyobis to calculate the number of citations of MBON data about mbon-docs HOT 4 CLOSED

gist: https://gist.github.com/MathewBiddle/7a029c679fb816f613bed20600cea8e6

import pandas as pd
import pyobis

institution_id = 23070

query = pyobis.dataset.search(instituteid=institution_id)

df = pd.DataFrame(query.execute())

df_meta = pd.DataFrame.from_records(df["results"])

for line in df_meta['abstract']:
  print(line,'\n--\n')

What I've summarized so far (manually by reading each abstract). Observing methods include:

• diver survey
• fisheries independent monitoring
• metabarcoding
• photo plot
• transect survey
• trawl survey
• bongo net
• quadrat survey

from mbon-docs.

from mbon-docs.

It would be cool if we could breakdown the MBON datasets by collection methods (eDNA, SCUBA, Passive Acoustic, Animal Tracking, etc..)

I think we would need to parse abstracts from the OBIS API response https://api.obis.org/v3/dataset?instituteid=23070

Unless there is another place we can gather collecting method information from the API?

from mbon-docs.

closed with ioos/ioos_metrics#84

from mbon-docs.