Comments (8)
FYI @ioos/pamdata
from mbon-docs.
Loosely based on the initial biological data flow at #40 (comment)
from mbon-docs.
Update to include sound propagation piece.
%%{
init: {
'theme': 'base',
'themeVariables': {
'primaryColor': '#007396',
'primaryTextColor': '#fff',
'primaryBorderColor': '#003087',
'lineColor': '#003087',
'secondaryColor': '#007396',
'tertiaryColor': '#CCD1D1'
},
'flowchart': { 'curve': 'basis' }
}
}%%
flowchart TD
A["hydrophone"]
B{{"PassivePacker"}}
C{{"Darwin Core
Alignment"}}
D[("NCEI")]
E[("IPT
OBIS-USA")]
F[/"MBON
Data Portal"\]
G([OBIS])
H([GBIF])
P[(IOOS RA ERDDAP)]
I(["IOOS Data Catalog
(data.ioos.us)"])
J([NOAA OneStop])
K([data.gov])
L(["Commerce
Data Hub"])
M[/"IOC-UNESCO Harmful Algae Information System"\]
N[/"Infographics"\]
%% O["GitHub /
%% protocols.io"]
R[/"NCEI Passive Acoustic Data Portal"\]
A -- Species Detections + sound propagation--> C
A --raw audio files & 1-min hybrid millidecade bands --> B
B --> D
%% A -- Protocols --> O
C --> E
E --> D
%% O .-> E
E --> G
E --> H
%% NOAA STUFF
%% A -- Environmental Observations --> D
A -- non-acoustic data --> P
P --> I
P -- raw --> D
P -- occurrence --> C
I --> J
I --> K
I --> L
D --> J
D --> K
D --> L
G .-> Q
H .-> Q
F .-> Q
D .-> Q
J .-> Q
K .-> Q
L .-> Q
D --> R
subgraph Q[Example Products]
M
N
F
end
from mbon-docs.
%%{
init: {
'theme': 'base',
'themeVariables': {
'primaryColor': '#007396',
'primaryTextColor': '#fff',
'primaryBorderColor': '#003087',
'lineColor': '#003087',
'secondaryColor': '#007396',
'tertiaryColor': '#CCD1D1'
},
'flowchart': { 'curve': 'basis' }
}
}%%
flowchart TD
pA(("passive\nacoustic\nmonitoring"))
A[("hydrophone")]
B{{"PassivePacker"}}
C{{"Darwin Core
Alignment"}}
D[("National Centers\nfor\nEnvironmental Information\n(NCEI)")]
E[("IPT
OBIS-USA")]
F[/"MBON
Data Portal"\]
G([OBIS])
H([GBIF])
%%P[(IOOS RA ERDDAP)]
%%I(["IOOS Data Catalog
%%(data.ioos.us)"])
J([NOAA OneStop])
K([data.gov])
L(["Commerce
Data Hub"])
M[/"IOC-UNESCO Harmful Algae Information System"\]
N[/"Infographics"\]
%% O["GitHub /
%% protocols.io"]
R[/"NCEI Passive Acoustic Data Portal"\]
pA --> A
A -- species detections\n+\nsound propagation--> C
A -- raw\nand\nprocessed\ndata --> B
B --> D
%% A -- Protocols --> O
C --> E
E --> D
%% O .-> E
E --> G
E --> H
%% NOAA STUFF
%% A -- Environmental Observations --> D
%%pA -- non-acoustic data --> P
%%P --> I
%%P -- raw --> D
%%P -- occurrence --> C
%%I --> J
%%I --> K
%%I --> L
D --> J
D --> K
D --> L
G --> D
G .-> Q
H .-> Q
F .-> Q
D .-> Q
J .-> Q
K .-> Q
L .-> Q
D --> R
subgraph Q[Example Products]
M
N
F
R
end
from mbon-docs.
Cleaning up some of the nuances in the diagram. Grouping federal catalogs, and example products.
%%{
init: {
'theme': 'base',
'themeVariables': {
'primaryColor': '#007396',
'primaryTextColor': '#fff',
'primaryBorderColor': '#003087',
'lineColor': '#003087',
'secondaryColor': '#007396',
'tertiaryColor': '#CCD1D1'
},
'flowchart': { 'curve': 'basis' }
}
}%%
flowchart TD
pA(("passive\nacoustic\nmonitoring"))
A[("hydrophone")]
B{{"PassivePacker"}}
C{{"Darwin Core
Alignment"}}
D[("National Centers\nfor\nEnvironmental Information\n(NCEI)")]
E[("IPT
OBIS-USA")]
F[/"MBON
Data Portal"\]
G([OBIS])
H([GBIF])
J([NOAA OneStop])
K([data.gov])
L(["Commerce
Data Hub"])
M[/"IOC-UNESCO Harmful Algae Information System"\]
N[/"Infographics"\]
R[/"NCEI Passive Acoustic Data Portal"\]
pA --> A
A -- species detections\n+\nsound propagation--> C
A -- raw\nand\nprocessed\ndata --> B
C --> E
E --> D
E --> G
E --> H
B --> D
D --> FC
G .-> EP
H .-> EP
D .-> EP
D --> R
FC .-> EP
subgraph EP [Example Products]
M
N
F
R
end
subgraph FC [Federal Catalogs]
J
K
L
end
from mbon-docs.
further defining raw and processed data:
Audio, sound level metrics (beyond 1 minute hybrid millidecade, standard metric), detections, sound propagation models, and well organized sound clips
from mbon-docs.
The revised version looks much better! And defining processed data is super helpful. Could we make the line from OBIS to NCEI a dashed line since that pathway is not fully defined yet?
from mbon-docs.
Thanks for taking a look. The pipeline between OBIS-USA's IPT and NCEI is fully operational. See https://www.ncei.noaa.gov/news/archiving-ocean-biodiversity-information-system-usa-obis-usa. The archive package can be found at https://www.ncei.noaa.gov/metadata/geoportal/rest/metadata/item/gov.noaa.nodc%3A0250940/html.
For reference, the Sanctuary Soundscape Monitoring Project (SanctSound) Daily Aggregated Species Detections have been archived via this pathway, from the most recent quarterly pull, at https://www.nodc.noaa.gov/archive/arc0199/0250940/6.6/data/0-data/noaa_sanctsound_daily_species/
from mbon-docs.
Related Issues (20)
- Update documentation on sending data to OBIS HOT 3
- Add MBON DMAC Working Group charter to this repo
- Add gh-action for updating dropdown menus HOT 12
- PAM data management refs HOT 2
- create a data product that maps the spatial and temporal monitoring efforts of MBON. HOT 3
- Recommended data license for MBON affiliated datasets mobilized to OBIS-USA HOT 2
- Add how-to add layers to BioEco Portal
- Imagery data management refs
- Add samplingProtocol to eDNA MBARI dataset HOT 8
- create flowchart for MBON data flow +data.ioos.gov +data.gov etc HOT 13
- Show the value of standardizing and sharing to OBIS HOT 4
- Hide data and metadata pages from sidebar HOT 1
- Build a quick start guide for MBON project data management activities HOT 2
- use pyobis to calculate the number of citations of MBON data HOT 4
- Update sending data to OBIS-USA section to include creating a ticket in bio_data_guide HOT 2
- Animal tracking data flows
- Create project plan for drafting a data catalog HOT 5
- Breakdown MBON datasets by collection methods (eDNA, SCUBA, Passive Acoustic, Animal Tracking, etc..) HOT 12
- Syntax error with mermaid diagram on data flow page HOT 8
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