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License: Apache License 2.0
Compliance Checker Plugin for UGRID: http://ugrid-conventions.github.io/ugrid-conventions
License: Apache License 2.0
All the other plugins are named cc-plugin-<name>
.
when i do compliance-checker -l
from the command line i get responded with below
- UGRID:2.0
- acdd:1.1
- acdd:1.3
- cf:1.6
- cf:1.7
- ioos:0.1
- ioos:1.1
- ....
where ugrid is listed as version 2.0 but from http://ugrid-conventions.github.io/ugrid-conventions/
states that they're on version 1. Am I missing where 2.0 exists?
@MathewBiddle can you rename this one for us?
One could have data on multiple grids within a file, each with a separate topology. In http://ugrid-conventions.github.io/ugrid-conventions/#topology the examples could all be concatentated together since all the mesh dimensions and definitions are all distinct.
I think the checker code should drop the >1 code, or add a +1 score to this case. Maybe:
mt = ds.get_variables_by_attributes(cf_role='mesh_topology')
if len(mt) >= 1:
score += 1
elif len(mt) < 1:
m = ('Variable with attribute "cf_role:mesh_topology" required')
messages.append(m)
or
mt = ds.get_variables_by_attributes(cf_role='mesh_topology')
if len(mt) == 1:
score += 1
elif len(mt) > 1:
score += 1
m = ('One variable with attribute "cf_role:mesh_topology" allowed')
messages.append(m)
elif len(mt) < 1:
m = ('Variable with attribute "cf_role:mesh_topology" required')
messages.append(m)
The capability for multiple meshes is an important feature for nesting and perhaps for subsetting.
Hey Folks,
Do you have a timeline for this plugin? Can we set a milestone so we can keep track of it?
conda
seems to install two different versions of netCDF4
when running the TravisCI builds. While this is not a critical issue, it will undoubtedly come back to bite someone.
Any insight as to why this happens is much appreciated.
I tried the suggested install method, and it did not work for me:
(python3) 649 [drf@V21837 tmp]$ conda install -c conda-forge cc-plugin-ugrid
Fetching package metadata ...............
PackageNotFoundError: Packages missing in current channels:
- cc-plugin-ugrid
We have searched for the packages in the following channels:
- https://conda.anaconda.org/conda-forge/osx-64
- https://conda.anaconda.org/conda-forge/noarch
- https://conda.anaconda.org/sean/osx-64
- https://conda.anaconda.org/sean/noarch
- https://repo.continuum.io/pkgs/main/osx-64
- https://repo.continuum.io/pkgs/main/noarch
- https://repo.continuum.io/pkgs/free/osx-64
- https://repo.continuum.io/pkgs/free/noarch
- https://repo.continuum.io/pkgs/r/osx-64
- https://repo.continuum.io/pkgs/r/noarch
- https://repo.continuum.io/pkgs/pro/osx-64
- https://repo.continuum.io/pkgs/pro/noarch
(python3) 650 [drf@V21837 tmp]$
See cc-plugin-og plugin pull request comment for the explanation for not using assert statements in the checker code vs pytest.
Hello, trying to utilze the checker to make a compliant file and thereby utilize some of the visualization packages. I ran my file and one of the tests checks the dimension name compared to number of dimensions. checker.py
if cty == 'edge_node_connectivity':
_dim1 = 'nedges'
_dim2size = 2
elif cty == 'face_node_connectivity':
_dim1 = 'nfaces'
_dim2size = 3
else:
raise NotImplementedError # haven't dealt with real 3D grids yet
In my case (2D), the logic ends up with _dim1 = 'nfaces' and _dim2size=3
. if the dimension is anythin aside from nfaces
for example nFaces
or faces
, when the comparison is made
if (dim1.name == _dim1) and (dim2.size == _dim2size):
# set the attr in the meshes dict
self.meshes[mesh][_dim1] = self.ds.dimensions[_dim1]
return True, 'regular'
elif (dim1.size == _dim2size) and (dim2.name == _dim1):
self.meshes[mesh][_dim1] = self.ds.dimensions[_dim1]
return True, 'nonstd'
else:
return False, None
then the test fails. I don't see where in the UGRID document that the dimension name should be nfaces
(exactly), infact the example uses nFaces
or nMesh2_face
for 2Dtopo Does the test need to be modified to not use such an explicit comparison or am I misinterpreting the conventions?
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