ValueError: Less than 10 cells in a group! about cellxgene_vip HOT 6 CLOSED

thanks for reporting. Is this happening in DEG? if you you comparing selected groups, please remove combined groups.

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there is no any combined groups

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I cannot reproduce this on our datasets, I assume you cannot share the data. Thus, could you please check a few things on the browser console (chrome: right click anywhere on the page, select 'inspect', select 'console' tab on the new opened side window).

1. DEGselCells()[1].length
2. Object.keys(getCells(null,true))
3. getCells(null,true)["celllist1"].length
4. getCells(null,true)["celllist2"].length

Thank you!

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1- 0
2-Uncaught ReferenceError: getCells is not defined
at :1:8
3-VM429:1 Uncaught ReferenceError: getCells is not defined
at :1:1
4- Uncaught ReferenceError: getCells is not defined
at :1:1

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Something is not correct, maybe you want to pull the latest version, or reinstall. you can test on our example instance: https://cellxgenevip-ms.bxgenomics.com/

If only one cell group was select on the cellxgene main window

Object.keys(getCells(null,true))
["celllist1"]0: "celllist1"

If two groups

Object.keys(getCells(null,true))
(2) ["celllist1", "celllist2"]

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If the latest version didn't fix this, please feel free to reopen the issue.

Thanks.

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