integrativemodeling / sea Goto Github PK

@procyon777 , with some tweaks the IMP modeling script works with current IMP:

python sj_SEA_multi_layers.py -r 1000 -w 1.0 -x ../SEAcmplx_XL.txt -o models.rmf -s stat.out --REFINE False --copy 3 --sym False

What is still missing though is the set of parameters you used to do the actual modeling for the publication (it looks like you ran it once, maybe picked the best model, and used that as input for another round of modeling). Please update the README file with the necessary invocations of the script.

We also need the output files so we can visualize the localization densities and deposit representative models (top-scoring model? cluster centroid?) These don't necessarily need to go in the repository itself (e.g. if they're big). Just point me to where they are on disk and I'll archive them.