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scda.2022: Synthetic CDISC Data Archive 2022

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GitHub commit activity GitHub contributors GitHub last commit GitHub pull requests GitHub repo size GitHub language count Project Status: Active โ€“ The project has reached a stable, usable state and is being actively developed. Current Version Open Issues

This R package contains synthetic CDISC data released during 2022. This synthetic data can be used as test data when developing teal applications, or statistical analysis functions. Due to the data not been derived from a real clinical trial, it provides an excellent method for generating reproducible examples when reporting errors.

Once this package is installed, it is recommended to use the scda package to access this synthetic data rather than using this package directly.

The data name convention in this package is <domain>_<?area?>_<added on date> and you can query the available data with

data(package = "scda.2022")

Installation

It is recommended that you create and use a Github PAT to install the latest version of this package. Once you have the PAT, run the following:

Sys.setenv(GITHUB_PAT = "your_access_token_here")
if (!require("remotes")) install.packages("remotes")
remotes::install_github("insightsengineering/scda.2022@*release")

A stable release of all NEST packages from June 2022 is also available here.

Note

The data in this package is an accumulation of datasets over time that were needed for documentation and unit testing code. We do not attempt to ensure this data is reproducible. The git repository has the folder data_raw which contains the scripts used to create some of the data.

Stargazers and Forkers

Stargazers over time

Stargazers over time

Stargazers

Stargazers repo roster for @insightsengineering/scda.2022

Forkers

Forkers repo roster for @insightsengineering/scda.2022

scda.2022's People

Contributors

6iris6 avatar arkadiuszbeer avatar ayogasekaram avatar cicdguy avatar denisovan31415 avatar edelarua avatar gogonzo avatar insights-engineering-bot avatar kartikeyakirar avatar kpagacz avatar legrasv avatar m7pr avatar melkiades avatar mhallal1 avatar nikolas-burkoff avatar pawelru avatar raviroche avatar shajoezhu avatar walkowif avatar

Stargazers

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Watchers

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scda.2022's Issues

Update `adab` dataset

Feature description

Update adab in scda.2022 after updates made in insightsengineering/random.cdisc.data#228.

Code of Conduct

  • I agree to follow this project's Code of Conduct.

Contribution Guidelines

  • I agree to follow this project's Contribution Guidelines.

Security Policy

  • I agree to follow this project's Security Policy.

Refresh scda datasets

Feature description

Update data after refreshing cached data in insightsengineering/random.cdisc.data#231

Code of Conduct

  • I agree to follow this project's Code of Conduct.

Contribution Guidelines

  • I agree to follow this project's Contribution Guidelines.

Security Policy

  • I agree to follow this project's Security Policy.

[UAT] re-read and reorganise NEWS entries

Please re-read the NEWS.md file and make it human readable, i.e. re-organise, change order, combine entries, group them if applicable, full sentence, no break lines, no new entries on the old version

Handle example data for CRAN

  • Do we want the package to be called scda.2022 or something else
  • The size of the package gets big quickly which makes R CND check --as-cran not happy - though see insightsengineering/scda#98

image

  • Users just want the example data they have to work with the example code, they are not interested in archives of old data - that's only useful for test cases
  • It may make sense for the data to end up in scda itself which would simplify some things...

Also consider insightsengineering/scda.2021#91

Update adab data

Update needed after refactoring done in random.cdisc.data .

Code of Conduct

  • I agree to follow this project's Code of Conduct.

Contribution Guidelines

  • I agree to follow this project's Contribution Guidelines.

Security Policy

  • I agree to follow this project's Security Policy.

Init `gh_pages`

There are some discussions about retirement but until this happen can we initiate gh_pages? Currently, a few workflows fail because of this.
image

Also the main Docs workflow (ran manually) fails:
image

The synthetic CDISC data released during 2022

What is your question?

It seems this package only contains ADAM datasets, right? No sdtm datasets.

Code of Conduct

  • I agree to follow this project's Code of Conduct.

Contribution Guidelines

  • I agree to follow this project's Contribution Guidelines.

Security Policy

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include updated cache data [part 1]

Motivation

Rencent changes updated random cdisc data

  • ADSL: ETHNIC, DTHADY
  • ADCM: CMINDC, CMDOSE, CMTRT, CMDOSU, CMROUTE, CMDOSFRQ
  • ADHM: MHDISTAT
  • ADVS: ANRLO, ANRHI
  • ADLB: ANRLO, ANRHI
  • ADAE: AERELNST
  • ADPC: NRELTM2

TODO

Definition of done

Updated data

Update ADPP

Update ADPP to add the REGIMEN column from insightsengineering/random.cdisc.data#160

Code of Conduct

  • I agree to follow this project's Code of Conduct.

Contribution Guidelines

  • I agree to follow this project's Contribution Guidelines.

Security Policy

  • I agree to follow this project's Security Policy.

Update `adlb` after bug fix

What happened?

The adlb dataset needs to be regenerated after applying bug fix. See corresponding PR in random.cdisc.data here.

sessionInfo()

No response

Relevant log output

No response

Code of Conduct

  • I agree to follow this project's Code of Conduct.

Contribution Guidelines

  • I agree to follow this project's Contribution Guidelines.

Security Policy

  • I agree to follow this project's Security Policy.

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