inovexcorp / mobi Goto Github PK

I got this error when I ran following command. I've double checked that the Dataset IRI is correct (I copied Dataset IRI on dataset edit popup.) What could be the problem?

mobi:import -d http://mobi.com/dataset/96a5eec5-c9d2-4d0a-89d0-953e8c2de418

When working with an ontology with a property that has multiple possible classes in its range, only one of the possible classes is searched and shown in the autocomplete.

@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix eg: <http://example.org/> .

eg:Something a rdfs:Class ;
    rdfs:label "Something"@en-US .

eg:SomethingElse a rdfs:Class ;
    rdfs:label "Something Else"@en-US .

eg:SomethingElseElse a rdfs:Class ;
    rdfs:label "Something Else Else"@en-US .

eg:ProblematicProperty a owl:ObjectProperty ;
    rdfs:domain eg:Something ;
    rdfs:range eg:SomethingElse, eg:SomethingElseElse .

Steps to reproduce:

1. Load the ontology above into Mobi
2. Create a new dataset using the new ontology
3. Use the Discover view to create an instance of SomethingElse and SomethingElseElse
4. Create an instance of Something and add a ProblematicProperty
5. See only one of the two previously-created instances appear

I think this has something to do with the following section, but I don't know the codebase well enough to know how to fix it I'm afraid!

When creating a new individual, I have the opportunity to assign its type. However I have not yet found out how to modify the type of existing individuals.

Also is there any reason why adding language tags is limited to only a handful in the first place?
Why not make it a free field with suggestions?

EDIT: If for some technical reason it must be a dropdown then the list of available values should be editable in Administration view.

I don't know where else I can get help so,
This XML file does not appear to have any style information associated with it. The document tree is shown below.
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<property name="sun.cpu.endian" value="little"/> <property name="user.home" value="C:\Users\diysu"/> <property name="user.language" value="en"/> <property name="java.specification.vendor" value="Oracle Corporation"/> <property name="java.version.date" value="2021-07-20"/> <property name="java.home" value="C:\Program Files\Java\jdk-16.0.2"/> <property name="file.separator" value="\"/> <property name="basedir" value="C:\Users\diysu\OneDrive\Documents\mobi-master\mobi-master\com.mobi.persistence.utils"/> <property name="java.vm.compressedOopsMode" value="32-bit"/> <property name="line.separator" value=" "/> <property name="java.vm.specification.vendor" value="Oracle Corporation"/> <property name="java.specification.name" value="Java Platform API Specification"/> <property name="logback.configurationFile" value="../mobi-parent/src/test/resources/logback-test.xml"/> <property name="surefire.real.class.path" value="C:\Users\diysu\AppData\Local\Temp\surefire18313893726673760943\surefirebooter17804865800515783545.jar"/> <property name="user.script" value=""/> <property name="sun.management.compiler" value="HotSpot 64-Bit Tiered Compilers"/> <property name="java.runtime.version" value="16.0.2+7-67"/> <property name="user.name" value="diysu"/> <property name="path.separator" value=";"/> <property name="os.version" value="10.0"/> <property name="java.runtime.name" value="Java(TM) SE Runtime Environment"/> <property name="file.encoding" value="Cp1252"/> <property name="java.vm.name" value="Java HotSpot(TM) 64-Bit Server VM"/> <property name="localRepository" value="C:\Users\diysu\.m2\repository"/> <property name="java.vendor.url.bug" value="https://bugreport.java.com/bugreport/"/> <property name="java.io.tmpdir" value="C:\Users\diysu\AppData\Local\Temp\"/> <property name="java.version" value="16.0.2"/> <property name="user.dir" value="C:\Users\diysu\OneDrive\Documents\mobi-master\mobi-master\com.mobi.persistence.utils"/> <property name="os.arch" value="amd64"/> <property name="java.vm.specification.name" value="Java Virtual Machine Specification"/> <property name="sun.os.patch.level" value=""/> <property name="java.library.path" value="C:\Program Files\Java\jdk-16.0.2\bin;C:\WINDOWS\Sun\Java\bin;C:\WINDOWS\system32;C:\WINDOWS;C:\Program Files\Common Files\Oracle\Java\javapath;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\WINDOWS\System32\WindowsPowerShell\v1.0\;C:\WINDOWS\System32\OpenSSH\;C:\Program Files\nodejs\;C:\Users\diysu\AppData\Local\Microsoft\WindowsApps;C:\Users\diysu\AppData\Local\Programs\Python\Python39\Scripts;C:\Users\diysu\AppData\Roaming\npm;C:\Program Files\Java\jdk-16.0.2;C:\Users\diysu\OneDrive\Documents\apache-maven-3.8.1-bin\apache-maven-3.8.1\bin;."/> <property name="java.vm.info" value="mixed mode, sharing"/> <property name="java.vendor" value="Oracle Corporation"/> <property name="java.vm.version" value="16.0.2+7-67"/> <property name="sun.io.unicode.encoding" value="UnicodeLittle"/> <property name="java.class.version" value="60.0"/> </properties> <testcase name="objectString returns object string from only statement in model" classname="com.mobi.persistence.utils.ModelsSpec" time="0.125"> <error message="Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3" type="java.lang.reflect.InaccessibleObjectException">java.lang.reflect.InaccessibleObjectException: Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3 at java.base/java.security.AccessController.doPrivileged(AccessController.java:312) at org.codehaus.groovy.util.LazyReference.getLocked(LazyReference.java:46) at org.codehaus.groovy.util.LazyReference.get(LazyReference.java:33) at com.mobi.persistence.utils.ModelsSpec.setup(ModelsSpec.groovy:84) </error> </testcase> <testcase name="object returns only object(IRI) in model" classname="com.mobi.persistence.utils.ModelsSpec" time="0"> <error message="Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3" type="java.lang.reflect.InaccessibleObjectException">java.lang.reflect.InaccessibleObjectException: Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3 at java.base/java.security.AccessController.doPrivileged(AccessController.java:312) at org.codehaus.groovy.util.LazyReference.getLocked(LazyReference.java:46) at org.codehaus.groovy.util.LazyReference.get(LazyReference.java:33) at com.mobi.persistence.utils.ModelsSpec.setup(ModelsSpec.groovy:84) </error> </testcase> <testcase name="object returns only object(Literal) in model" classname="com.mobi.persistence.utils.ModelsSpec" time="0"> <error message="Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3" type="java.lang.reflect.InaccessibleObjectException">java.lang.reflect.InaccessibleObjectException: Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3 at java.base/java.security.AccessController.doPrivileged(AccessController.java:312) at org.codehaus.groovy.util.LazyReference.getLocked(LazyReference.java:46) at org.codehaus.groovy.util.LazyReference.get(LazyReference.java:33) at com.mobi.persistence.utils.ModelsSpec.setup(ModelsSpec.groovy:84) </error> </testcase> <testcase name="objectIRI returns only object IRI in model" classname="com.mobi.persistence.utils.ModelsSpec" time="0"> <error message="Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3" type="java.lang.reflect.InaccessibleObjectException">java.lang.reflect.InaccessibleObjectException: Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3 at java.base/java.security.AccessController.doPrivileged(AccessController.java:312) at org.codehaus.groovy.util.LazyReference.getLocked(LazyReference.java:46) at org.codehaus.groovy.util.LazyReference.get(LazyReference.java:33) at com.mobi.persistence.utils.ModelsSpec.setup(ModelsSpec.groovy:84) </error> </testcase> <testcase name="objectResource returns only object Resource in model" classname="com.mobi.persistence.utils.ModelsSpec" time="0.015"> <error message="Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3" type="java.lang.reflect.InaccessibleObjectException">java.lang.reflect.InaccessibleObjectException: Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3 at java.base/java.security.AccessController.doPrivileged(AccessController.java:312) at org.codehaus.groovy.util.LazyReference.getLocked(LazyReference.java:46) at org.codehaus.groovy.util.LazyReference.get(LazyReference.java:33) at com.mobi.persistence.utils.ModelsSpec.setup(ModelsSpec.groovy:84) </error> </testcase> <testcase name="objectValue returns only object IRI in model" classname="com.mobi.persistence.utils.ModelsSpec" time="0"> <error message="Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3" type="java.lang.reflect.InaccessibleObjectException">java.lang.reflect.InaccessibleObjectException: Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3 at java.base/java.security.AccessController.doPrivileged(AccessController.java:312) at org.codehaus.groovy.util.LazyReference.getLocked(LazyReference.java:46) at org.codehaus.groovy.util.LazyReference.get(LazyReference.java:33) at com.mobi.persistence.utils.ModelsSpec.setup(ModelsSpec.groovy:84) </error> </testcase> <testcase name="predicate returns only predicate in model" classname="com.mobi.persistence.utils.ModelsSpec" time="0"> <error message="Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3" type="java.lang.reflect.InaccessibleObjectException">java.lang.reflect.InaccessibleObjectException: Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3 at java.base/java.security.AccessController.doPrivileged(AccessController.java:312) at org.codehaus.groovy.util.LazyReference.getLocked(LazyReference.java:46) at org.codehaus.groovy.util.LazyReference.get(LazyReference.java:33) at com.mobi.persistence.utils.ModelsSpec.setup(ModelsSpec.groovy:84) </error> </testcase> <testcase name="subject returns only subject (IRI) in model" classname="com.mobi.persistence.utils.ModelsSpec" time="0"> <error message="Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3" type="java.lang.reflect.InaccessibleObjectException">java.lang.reflect.InaccessibleObjectException: Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3 at java.base/java.security.AccessController.doPrivileged(AccessController.java:312) at org.codehaus.groovy.util.LazyReference.getLocked(LazyReference.java:46) at org.codehaus.groovy.util.LazyReference.get(LazyReference.java:33) at com.mobi.persistence.utils.ModelsSpec.setup(ModelsSpec.groovy:84) </error> </testcase> <testcase name="subject returns only subject (BNode) in model" classname="com.mobi.persistence.utils.ModelsSpec" time="0"> <error message="Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3" type="java.lang.reflect.InaccessibleObjectException">java.lang.reflect.InaccessibleObjectException: Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3 at java.base/java.security.AccessController.doPrivileged(AccessController.java:312) at org.codehaus.groovy.util.LazyReference.getLocked(LazyReference.java:46) at org.codehaus.groovy.util.LazyReference.get(LazyReference.java:33) at com.mobi.persistence.utils.ModelsSpec.setup(ModelsSpec.groovy:84) </error> </testcase> <testcase name="subjectBNode returns only subject BNode in model" classname="com.mobi.persistence.utils.ModelsSpec" time="0"> <error message="Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3" type="java.lang.reflect.InaccessibleObjectException">java.lang.reflect.InaccessibleObjectException: Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3 at java.base/java.security.AccessController.doPrivileged(AccessController.java:312) at org.codehaus.groovy.util.LazyReference.getLocked(LazyReference.java:46) at org.codehaus.groovy.util.LazyReference.get(LazyReference.java:33) at com.mobi.persistence.utils.ModelsSpec.setup(ModelsSpec.groovy:84) </error> </testcase> <testcase name="subjectIRI returns only subject (IRI) in model" classname="com.mobi.persistence.utils.ModelsSpec" time="0"> <error message="Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3" type="java.lang.reflect.InaccessibleObjectException">java.lang.reflect.InaccessibleObjectException: Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3 at java.base/java.security.AccessController.doPrivileged(AccessController.java:312) at org.codehaus.groovy.util.LazyReference.getLocked(LazyReference.java:46) at org.codehaus.groovy.util.LazyReference.get(LazyReference.java:33) at com.mobi.persistence.utils.ModelsSpec.setup(ModelsSpec.groovy:84) </error> </testcase> <testcase name="findFirstSubject returns the subject (IRI) when provided a matching predicate and object" classname="com.mobi.persistence.utils.ModelsSpec" time="0"> <error message="Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3" type="java.lang.reflect.InaccessibleObjectException">java.lang.reflect.InaccessibleObjectException: Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3 at java.base/java.security.AccessController.doPrivileged(AccessController.java:312) at org.codehaus.groovy.util.LazyReference.getLocked(LazyReference.java:46) at org.codehaus.groovy.util.LazyReference.get(LazyReference.java:33) at com.mobi.persistence.utils.ModelsSpec.setup(ModelsSpec.groovy:84) </error> </testcase> <testcase name="findFirstSubject returns an empty optional when provided a matching predicate and non matching object" classname="com.mobi.persistence.utils.ModelsSpec" time="0.016"> <error message="Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3" type="java.lang.reflect.InaccessibleObjectException">java.lang.reflect.InaccessibleObjectException: Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3 at java.base/java.security.AccessController.doPrivileged(AccessController.java:312) at org.codehaus.groovy.util.LazyReference.getLocked(LazyReference.java:46) at org.codehaus.groovy.util.LazyReference.get(LazyReference.java:33) at com.mobi.persistence.utils.ModelsSpec.setup(ModelsSpec.groovy:84) </error> </testcase> <testcase name="findFirstSubject returns an empty optional when provided a non matching predicate and matching object" classname="com.mobi.persistence.utils.ModelsSpec" time="0"> <error message="Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3" type="java.lang.reflect.InaccessibleObjectException">java.lang.reflect.InaccessibleObjectException: Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3 at java.base/java.security.AccessController.doPrivileged(AccessController.java:312) at org.codehaus.groovy.util.LazyReference.getLocked(LazyReference.java:46) at org.codehaus.groovy.util.LazyReference.get(LazyReference.java:33) at com.mobi.persistence.utils.ModelsSpec.setup(ModelsSpec.groovy:84) </error> </testcase> <testcase name="findFirstObject returns the object (IRI) when provided a matching subject and predicate" classname="com.mobi.persistence.utils.ModelsSpec" time="0"> <error message="Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3" type="java.lang.reflect.InaccessibleObjectException">java.lang.reflect.InaccessibleObjectException: Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3 at java.base/java.security.AccessController.doPrivileged(AccessController.java:312) at org.codehaus.groovy.util.LazyReference.getLocked(LazyReference.java:46) at org.codehaus.groovy.util.LazyReference.get(LazyReference.java:33) at com.mobi.persistence.utils.ModelsSpec.setup(ModelsSpec.groovy:84) </error> </testcase> <testcase name="findFirstObject returns an empty optional when provided a matching subject and non matching predicate" classname="com.mobi.persistence.utils.ModelsSpec" time="0"> <error message="Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3" type="java.lang.reflect.InaccessibleObjectException">java.lang.reflect.InaccessibleObjectException: Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3 at java.base/java.security.AccessController.doPrivileged(AccessController.java:312) at org.codehaus.groovy.util.LazyReference.getLocked(LazyReference.java:46) at org.codehaus.groovy.util.LazyReference.get(LazyReference.java:33) at com.mobi.persistence.utils.ModelsSpec.setup(ModelsSpec.groovy:84) </error> </testcase> <testcase name="findFirstObject returns an empty optional when provided a non matching subject and matching predicate" classname="com.mobi.persistence.utils.ModelsSpec" time="0"> <error message="Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3" type="java.lang.reflect.InaccessibleObjectException">java.lang.reflect.InaccessibleObjectException: Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3 at java.base/java.security.AccessController.doPrivileged(AccessController.java:312) at org.codehaus.groovy.util.LazyReference.getLocked(LazyReference.java:46) at org.codehaus.groovy.util.LazyReference.get(LazyReference.java:33) at com.mobi.persistence.utils.ModelsSpec.setup(ModelsSpec.groovy:84) </error> </testcase> <testcase name="createModel for OBO format returns correct data" classname="com.mobi.persistence.utils.ModelsSpec" time="0"> <error message="Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3" type="java.lang.reflect.InaccessibleObjectException">java.lang.reflect.InaccessibleObjectException: Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3 at java.base/java.security.AccessController.doPrivileged(AccessController.java:312) at org.codehaus.groovy.util.LazyReference.getLocked(LazyReference.java:46) at org.codehaus.groovy.util.LazyReference.get(LazyReference.java:33) at com.mobi.persistence.utils.ModelsSpec.setup(ModelsSpec.groovy:84) </error> </testcase> <testcase name="createModel with preferredExtension for OBO format returns correct data" classname="com.mobi.persistence.utils.ModelsSpec" time="0"> <error message="Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3" type="java.lang.reflect.InaccessibleObjectException">java.lang.reflect.InaccessibleObjectException: Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3 at java.base/java.security.AccessController.doPrivileged(AccessController.java:312) at org.codehaus.groovy.util.LazyReference.getLocked(LazyReference.java:46) at org.codehaus.groovy.util.LazyReference.get(LazyReference.java:33) at com.mobi.persistence.utils.ModelsSpec.setup(ModelsSpec.groovy:84) </error> </testcase> <testcase name="createModel with invalid extension for OBO format returns correct data" classname="com.mobi.persistence.utils.ModelsSpec" time="0.016"> <error message="Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3" type="java.lang.reflect.InaccessibleObjectException">java.lang.reflect.InaccessibleObjectException: Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3 at java.base/java.security.AccessController.doPrivileged(AccessController.java:312) at org.codehaus.groovy.util.LazyReference.getLocked(LazyReference.java:46) at org.codehaus.groovy.util.LazyReference.get(LazyReference.java:33) at com.mobi.persistence.utils.ModelsSpec.setup(ModelsSpec.groovy:84) </error> </testcase> <testcase name="createModel for Trig format returns correct data" classname="com.mobi.persistence.utils.ModelsSpec" time="0"> <error message="Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3" type="java.lang.reflect.InaccessibleObjectException">java.lang.reflect.InaccessibleObjectException: Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3 at java.base/java.security.AccessController.doPrivileged(AccessController.java:312) at org.codehaus.groovy.util.LazyReference.getLocked(LazyReference.java:46) at org.codehaus.groovy.util.LazyReference.get(LazyReference.java:33) at com.mobi.persistence.utils.ModelsSpec.setup(ModelsSpec.groovy:84) </error> </testcase> <testcase name="createModel with preferredExtension for Trig format returns correct data" classname="com.mobi.persistence.utils.ModelsSpec" time="0"> <error message="Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3" type="java.lang.reflect.InaccessibleObjectException">java.lang.reflect.InaccessibleObjectException: Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3 at java.base/java.security.AccessController.doPrivileged(AccessController.java:312) at org.codehaus.groovy.util.LazyReference.getLocked(LazyReference.java:46) at org.codehaus.groovy.util.LazyReference.get(LazyReference.java:33) at com.mobi.persistence.utils.ModelsSpec.setup(ModelsSpec.groovy:84) </error> </testcase> <testcase name="createModel with preferredExtension for Trig format Zipped returns correct data" classname="com.mobi.persistence.utils.ModelsSpec" time="0"> <error message="Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3" type="java.lang.reflect.InaccessibleObjectException">java.lang.reflect.InaccessibleObjectException: Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3 at java.base/java.security.AccessController.doPrivileged(AccessController.java:312) at org.codehaus.groovy.util.LazyReference.getLocked(LazyReference.java:46) at org.codehaus.groovy.util.LazyReference.get(LazyReference.java:33) at com.mobi.persistence.utils.ModelsSpec.setup(ModelsSpec.groovy:84) </error> </testcase> <testcase name="createModel with invalid extension for Trig format returns correct data" classname="com.mobi.persistence.utils.ModelsSpec" time="0"> <error message="Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3" type="java.lang.reflect.InaccessibleObjectException">java.lang.reflect.InaccessibleObjectException: Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3 at java.base/java.security.AccessController.doPrivileged(AccessController.java:312) at org.codehaus.groovy.util.LazyReference.getLocked(LazyReference.java:46) at org.codehaus.groovy.util.LazyReference.get(LazyReference.java:33) at com.mobi.persistence.utils.ModelsSpec.setup(ModelsSpec.groovy:84) </error> </testcase> <testcase name="createModel for OWL format returns correct data" classname="com.mobi.persistence.utils.ModelsSpec" time="0"> <error message="Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3" type="java.lang.reflect.InaccessibleObjectException">java.lang.reflect.InaccessibleObjectException: Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3 at java.base/java.security.AccessController.doPrivileged(AccessController.java:312) at org.codehaus.groovy.util.LazyReference.getLocked(LazyReference.java:46) at org.codehaus.groovy.util.LazyReference.get(LazyReference.java:33) at com.mobi.persistence.utils.ModelsSpec.setup(ModelsSpec.groovy:84) </error> </testcase> <testcase name="createModel with preferredExtension for OWL format returns correct data" classname="com.mobi.persistence.utils.ModelsSpec" time="0.015"> <error message="Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3" type="java.lang.reflect.InaccessibleObjectException">java.lang.reflect.InaccessibleObjectException: Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3 at java.base/java.security.AccessController.doPrivileged(AccessController.java:312) at org.codehaus.groovy.util.LazyReference.getLocked(LazyReference.java:46) at org.codehaus.groovy.util.LazyReference.get(LazyReference.java:33) at com.mobi.persistence.utils.ModelsSpec.setup(ModelsSpec.groovy:84) </error> </testcase> <testcase name="createModel for invalid format throws an Exception" classname="com.mobi.persistence.utils.ModelsSpec" time="0"> <error message="Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3" type="java.lang.reflect.InaccessibleObjectException">java.lang.reflect.InaccessibleObjectException: Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3 at java.base/java.security.AccessController.doPrivileged(AccessController.java:312) at org.codehaus.groovy.util.LazyReference.getLocked(LazyReference.java:46) at org.codehaus.groovy.util.LazyReference.get(LazyReference.java:33) at com.mobi.persistence.utils.ModelsSpec.setup(ModelsSpec.groovy:84) </error> </testcase> <testcase name="createModel with invalid extension for OWL format returns correct data" classname="com.mobi.persistence.utils.ModelsSpec" time="0"> <error message="Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3" type="java.lang.reflect.InaccessibleObjectException">java.lang.reflect.InaccessibleObjectException: Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3 at java.base/java.security.AccessController.doPrivileged(AccessController.java:312) at org.codehaus.groovy.util.LazyReference.getLocked(LazyReference.java:46) at org.codehaus.groovy.util.LazyReference.get(LazyReference.java:33) at com.mobi.persistence.utils.ModelsSpec.setup(ModelsSpec.groovy:84) </error> </testcase> <testcase name="createModel with a valid compressed (.zip) file format returns correct data" classname="com.mobi.persistence.utils.ModelsSpec" time="0"> <error message="Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3" type="java.lang.reflect.InaccessibleObjectException">java.lang.reflect.InaccessibleObjectException: Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3 at java.base/java.security.AccessController.doPrivileged(AccessController.java:312) at org.codehaus.groovy.util.LazyReference.getLocked(LazyReference.java:46) at org.codehaus.groovy.util.LazyReference.get(LazyReference.java:33) at com.mobi.persistence.utils.ModelsSpec.setup(ModelsSpec.groovy:84) </error> </testcase> <testcase name="createModel with a valid compressed (ext.gzip) file format returns correct data" classname="com.mobi.persistence.utils.ModelsSpec" time="0"> <error message="Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3" type="java.lang.reflect.InaccessibleObjectException">java.lang.reflect.InaccessibleObjectException: Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3 at java.base/java.security.AccessController.doPrivileged(AccessController.java:312) at org.codehaus.groovy.util.LazyReference.getLocked(LazyReference.java:46) at org.codehaus.groovy.util.LazyReference.get(LazyReference.java:33) at com.mobi.persistence.utils.ModelsSpec.setup(ModelsSpec.groovy:84) </error> </testcase> <testcase name="createModel with extension for invalid format throws an Exception" classname="com.mobi.persistence.utils.ModelsSpec" time="0"> <error message="Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3" type="java.lang.reflect.InaccessibleObjectException">java.lang.reflect.InaccessibleObjectException: Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3 at java.base/java.security.AccessController.doPrivileged(AccessController.java:312) at org.codehaus.groovy.util.LazyReference.getLocked(LazyReference.java:46) at org.codehaus.groovy.util.LazyReference.get(LazyReference.java:33) at com.mobi.persistence.utils.ModelsSpec.setup(ModelsSpec.groovy:84) </error> </testcase> <testcase name="createModel with invalid extension for invalid format throws an Exception" classname="com.mobi.persistence.utils.ModelsSpec" time="0"> <error message="Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3" type="java.lang.reflect.InaccessibleObjectException">java.lang.reflect.InaccessibleObjectException: Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3 at java.base/java.security.AccessController.doPrivileged(AccessController.java:312) at org.codehaus.groovy.util.LazyReference.getLocked(LazyReference.java:46) at org.codehaus.groovy.util.LazyReference.get(LazyReference.java:33) at com.mobi.persistence.utils.ModelsSpec.setup(ModelsSpec.groovy:84) </error> </testcase> <testcase name="createModel with an invalid compressed (.zip) file format throws an Exception" classname="com.mobi.persistence.utils.ModelsSpec" time="0"> <error message="Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3" type="java.lang.reflect.InaccessibleObjectException">java.lang.reflect.InaccessibleObjectException: Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3 at java.base/java.security.AccessController.doPrivileged(AccessController.java:312) at org.codehaus.groovy.util.LazyReference.getLocked(LazyReference.java:46) at org.codehaus.groovy.util.LazyReference.get(LazyReference.java:33) at com.mobi.persistence.utils.ModelsSpec.setup(ModelsSpec.groovy:84) </error> </testcase> <testcase name="createModel with multiple compressed file (.zip) throws an Exception" classname="com.mobi.persistence.utils.ModelsSpec" time="0.016"> <error message="Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3" type="java.lang.reflect.InaccessibleObjectException">java.lang.reflect.InaccessibleObjectException: Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3 at java.base/java.security.AccessController.doPrivileged(AccessController.java:312) at org.codehaus.groovy.util.LazyReference.getLocked(LazyReference.java:46) at org.codehaus.groovy.util.LazyReference.get(LazyReference.java:33) at com.mobi.persistence.utils.ModelsSpec.setup(ModelsSpec.groovy:84) </error> </testcase> <testcase name="createModel with an invalid compressed (.gzip) file format throws an Exception" classname="com.mobi.persistence.utils.ModelsSpec" time="0"> <error message="Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3" type="java.lang.reflect.InaccessibleObjectException">java.lang.reflect.InaccessibleObjectException: Unable to make private java.lang.Class(java.lang.ClassLoader,java.lang.Class) accessible: module java.base does not "opens java.lang" to unnamed module @4590c9c3 at java.base/java.security.AccessController.doPrivileged(AccessController.java:312) at org.codehaus.groovy.util.LazyReference.getLocked(LazyReference.java:46) at org.codehaus.groovy.util.LazyReference.get(LazyReference.java:33) at com.mobi.persistence.utils.ModelsSpec.setup(ModelsSpec.groovy:84) </error> </testcase> </testsuite>

Description Resource Path Location Type
com.mobi.orm:rdf-orm-maven-plugin:jar:2.2.0-SNAPSHOT was not found in https://nexus.inovexcorp.com/nexus/content/repositories/public-maven-prod-group/ during a previous attempt. This failure was cached in the local repository and resolution is not reattempted until the update interval of inovex has elapsed or updates are forced pom.xml /itests-orm line 1 Maven pom Loading Problem

[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 01:51 h
[INFO] Finished at: 2017-09-23T01:58:56+05:30
[INFO] Final Memory: 34M/336M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-failsafe-plugin:2.18.1:integration-test (integration-test) on project matonto-parent: Execution integration-test of goal org.apache.maven.plugins:maven-failsafe-plugin:2.18.1:integration-test failed: Plugin org.apache.maven.plugins:maven-failsafe-plugin:2.18.1 or one of its dependencies could not be resolved: Could not transfer artifact org.apache.maven.surefire:surefire-api:jar:2.18.1 from/to matonto.hanover.releases (http://nexus.matonto.org/repository/matonto-public/): Connect to nexus.matonto.org:80 [nexus.matonto.org/50.246.88.26] failed: Connection timed out (Connection timed out) -> [Help 1]

Could anyone help me resolve the issue?

I tried executing the steps as described in the documentation below
https://mobi.inovexcorp.com/docs/#installing_the_docker_image

using Docker on my local machine I get a certification error but ohterwise everything is working fine
however when deploying the docker image on a ubuntu server running docker deamon and exposing the port behind an nginx reverse proxy, I get no paged displayed and the connection terminates after some time.

I double checked that the container gets the request from the client throught the nginx reverse proxy. I am guessing it has soemthing to do with the SSL encryption.
Is there a way to disable such and listen on HTTP instead of HTTPS

We are building our domain ontologies on the mid-level Common Core Ontologies which build on the upper level Basic Formal Ontology. As you can imagine, we can pretty quickly get 10 or more levels deep into the taxonomy and on some screens the class names are entirely hidden until you scroll horizontally.

I have trouble mapping data with the https://d-nb.info/standards/elementset/gnd ontology. For example, for the class DifferentiatedPerson, some data properties are available, but many/most are not.

This one, for example, is available:

:academicDegree  a          owl:DatatypeProperty , rdf:Property ;
        rdfs:comment        "An academic degree."@en , "Ein Rang, der als Bestätigung für wissenschaftliche Leistungen verliehen wird."@de ;
        rdfs:domain         :DifferentiatedPerson ;
        rdfs:isDefinedBy    : ;
        rdfs:label          "Akademischer Grad"@de , "Academic degree"@en ;
        rdfs:subPropertyOf  foaf:title ;
        :marc21equivalent   "550 $a $g $4=akad" .

This one isn't:

:biographicalOrHistoricalInformation
        a                  rdf:Property , owl:DatatypeProperty ;
        rdfs:comment       "Zusammenfassung von wesentlichen biografischen, geschichtlichen oder\n      anderen Informationen über die zu beschreibende Entität."@de , "Summary of the essential biographical, historical, or other\n      information about the described entity."@en ;
        rdfs:domain        [ a            owl:Class ;
                             owl:unionOf  ( :ConferenceOrEvent :CorporateBody :DifferentiatedPerson :Family :PlaceOrGeographicName :SubjectHeading :Work )
                           ] ;
        rdfs:isDefinedBy   : ;
        rdfs:label         "Biographical or historical information"@en , "Biografische oder historische Angaben"@de ;
        rdfs:range         rdfs:Literal ;
        :marc21equivalent  "678 $b" ;
        :superPropertyOf   <http://rdaregistry.info/Elements/a/P50113> , <http://rdaregistry.info/Elements/a/P50035> , <http://rdaregistry.info/Elements/a/P50064> .

Might it be possible that complex rdfs:domain statements aren't (yet) recognized by Mobi? If that is, should this be implemented?

Try adding new ontology by uploading doap.rdf from:
https://github.com/ewilderj/doap/tree/master/schema
e.g. portuguese description:
Vocabulário de descrição de um Projeto
becomes
Vocabulário de descrição de um Projeto

Adding special characters manually in mobi works fine, so the problem with encoding is only with the upload.

I just made the mistake of committing a change to the ontology, which invalidated a mapping that I had previously put together. As it seems, there is no way of getting that mapping back, since I cannot revert the commit (#23) or open the mapping ("ERROR: the source ontology for the mapping and/or its imported ontologies have been changed and are no longer compatible.").

Shouldn't it be possible to re-sync the mapping with the changed ontology or in any other way recover it in these cases?

Does Mobi support reasoners for consistency check?

I and Minchul (please contact [email protected] for further conversation) encounter a problem when our ontology has had BFO imported and then we were importing the Information Content Entity (ICE) ontology. ICE also imports BFO. And the result of the ICE import is that all classes we created under BFO earlier disappeared.

Hi, is it possible to reset an ontology to an earlier commit? If not, is this a feature worth considering?

In the class hierarchy panel (or the SKOS concept panel), should we be able to drag and drop items to re-arrange the hierarchy?

[All done with admin account]

First ontology I created in fresh mobi 1.15.57 installation had most of the functionality disabled. I was only able to Create new tags, rest of + options were greyed out.

Second uploaded ontology gave me possibility to add but existing objects in the list are greyed out - I can select/view them but can't edit. (Problem persists on created branch)

Third created ontology - I have all access to add/edit/delete

I made sure the problematic ontologies have Record Access Control set to Everyone for all operations - no effect