Project UUID: 8185730f-4113-40d3-9cc3-929271784c2b
Project Title: A single-cell transcriptome atlas of the adult human retina
Project Short Name: WongAdultRetina
Submission UUID: 668791ed-deec-4470-b23a-9b80fd133e1c
Environment: Production

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Project UUID: 577c946d-6de5-4b55-a854-cd3fde40bff2
Project Title: The Single Cell Transcriptomic Landscape of Early Human Diabetic Nephropathy
Project Short Name: Diabetic Nephropathy snRNA-seq
Submission UUID: a69c731b-9db7-45e3-938f-daf2e4636a6e
Environment: Production

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Project UUID: 9c20a245-f2c0-43ae-82c9-2232ec6b594f
Project Title: Transcriptomic classification of human retinal cell types with single-nuclei RNA-seq.
Project Short Name: snRNA-seq_for_human_retina
Submission UUID: 7d515499-b5b6-4083-95cd-6a393344865e
Environment: Production

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Project UUID: f83165c5-e2ea-4d15-a5cf-33f3550bffde
Project Title: Reconstructing the human first trimester fetal-maternal interface using single cell transcriptomics
Project Short Name: Fetal/Maternal Interface
Submission UUID: 46fe8bd7-329b-4f09-b227-5ee48c109c16
Environment: Production

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Project UUID: a9c022b4-c771-4468-b769-cabcf9738de3
Project Title: Comparison, calibration, and benchmarking of high-throughput single cell RNA-Seq techniques for unbiased cell-type classification
Project Short Name: Drop-seq, DroNc-seq, Fluidigm C1 Comparison
Submission UUID: bf3116e5-1af1-46c2-8bbd-44dac49d1e7f
Environment: Production

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Project UUID: ae71be1d-ddd8-4feb-9bed-24c3ddb6e1ad
Project Title: Single-cell RNA-seq analysis of human pancreas from healthy individuals and type 2 diabetes patients
Project Short Name: Healthy and type 2 diabetes pancreas
Submission UUID: c81f7d54-a27f-4212-a6df-88dde947f7cc
Environment: Production

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Project UUID: 8c3c290d-dfff-4553-8868-54ce45f4ba7f
Project Title: Melanoma infiltration of stromal and immune cells
Project Short Name: Mouse Melanoma
Submission UUID: 4756b97c-3666-4ff0-9c48-611dc06b7740
Environment: Production

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Project UUID: 2043c65a-1cf8-4828-a656-9e247d4e64f1
Project Title: Single-cell RNA-seq analysis throughout a 125-day differentiation protocol that converted H1 human embryonic stem cells to a variety of ventrally-derived cell types.
Project Short Name: Single cell RNAseq characterization of cell types produced over time in an in vitro model of human inhibitory interneuron differentiation.
Submission UUID: 0948a727-228f-4cfc-857e-6243c6aed08d
Environment: Production

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Project UUID: 008e40e8-66ae-43bb-951c-c073a2fa6774
Project Title: HDCA project: single cell transcriptomics
Project Short Name: HDCA-Sweden-10x
Submission UUID: 071fc37f-1a01-4cf7-a6f5-2662c42c12b6
Environment: Production

"HDCA-Sweden-10x" needs to be re-ingested for re-bundling on the 10X data. Go through Project Completion QA Checklist prior to re-ingest into production.

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Project UUID: cddab57b-6868-4be4-806f-395ed9dd635a
Project Title: Single cell transcriptome analysis of human pancreas reveals transcriptional signatures of aging and somatic mutation patterns.
Project Short Name: Single cell transcriptome analysis of human pancreas
Submission UUID: 5cd8b827-e4fa-4ffa-86f5-f0f8302baee9
Environment: Production

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Project UUID: 1defdada-a365-44ad-9b29-443b06bd11d6
Project Title: A single-cell molecular map of mouse gastrulation and early organogenesis
Project Short Name: MouseGastrulationAtlas
Submission UUID: 19c5c89a-7bfb-4b4d-9ff5-3ef009304ba5
Environment: Production

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Project UUID: f81efc03-9f56-4354-aabb-6ce819c3d414
Project Title: Cell hashing with barcoded antibodies enables multiplexing and doublet detection for single cell genomics
Project Short Name: Multiplexed scRNA-seq with barcoded antibodies
Submission UUID: 6931d821-9cd2-4ae1-acf7-62cd3b90082e
Environment: Production

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Project UUID: 4a95101c-9ffc-4f30-a809-f04518a23803
Project Title: A single-cell reference map of transcriptional states for human blood and tissue T cell activation
Project Short Name: HumanTissueTcellActivation
Submission UUID: 8b5feb5e-9039-4c54-9e79-053e490c141a
Environment: Production

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Project UUID: 90bd6933-40c0-48d4-8d76-778c103bf545
Project Title: Precursors of human CD4+ cytotoxic T lymphocytes identified by single-cell transcriptome analysis
Project Short Name: CD4+ cytotoxic T lymphocytes
Submission UUID: 3bb965cb-2a6f-4802-a4f2-52d0423e6ecc
Environment: Production

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Project UUID: cc95ff89-2e68-4a08-a234-480eca21ce79
Project Title: Census of Immune Cells
Project Short Name: 1M Immune Cells
Submission UUID: 85e72912-9f91-4489-8169-3b43cc65a16a
Environment: Production

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Project UUID: 4d6f6c96-2a83-43d8-8fe1-0f53bffd4674
Project Title: Dissecting the human liver cellular landscape by single cell RNA-seq reveals novel intrahepatic monocyte/ macrophage populations
Project Short Name: SingleCellLiverLandscape
Submission UUID: 1e2601a5-8938-446c-bbb3-1f37a84b11da
Environment: Production

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Project UUID: a29952d9-925e-40f4-8a1c-274f118f1f51
Project Title: Bone marrow plasma cells from hip replacement surgeries
Project Short Name: BM_PC
Submission UUID: 67abd7a1-644b-48d0-b8b8-251d8195a742
Environment: Production

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Project UUID: c4077b3c-5c98-4d26-a614-246d12c2e5d7
Project Title: Ischaemic sensitivity of human tissue by single cell RNA seq
Project Short Name: TissueStability
Submission UUID: fd52efcc-6924-4c8a-b68c-a299aea1d80f
Environment: Production

This project is also know as the "Meyer dataset" or "TissueSensitivity" and was re-ingested to incorporate additional data from the contributor.

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Project UUID: 88ec040b-8705-4f77-8f41-f81e57632f7d
Project Title: Systematic comparative analysis of single cell RNA-sequencing methods
Project Short Name: scRNAseqSystemicComparison
Submission UUID: d1610c4a-76c6-4b69-af63-c74af869fa75
Environment: Production

This project is also known as the "Jiarui dataset".

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Project UUID: 005d611a-14d5-4fbf-846e-571a1f874f70
Project Title: Assessing the relevance of organoids to model inter-individual variation
Project Short Name: HPSI human cerebral organoids
Submission UUID: fce97270-fce0-4744-8a4e-a93d95521852
Environment: Production

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Project UUID: e0009214-c0a0-4a7b-96e2-d6a83e966ce0
Project Title: Tabula Muris: Transcriptomic characterization of 20 organs and tissues from Mus musculus at single cell resolution
Project Short Name: Tabula Muris
Submission UUID: 14df1f92-155c-4da2-97fc-85601dee64da
Environment: Production

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Project UUID: 4e6f083b-5b9a-4393-9890-2a83da8188f1
Project Title: The emergent landscape of the mouse gut endoderm at single-cell resolution
Project Short Name: Mouse Endoderm Project
Submission UUID: 0fb44736-c50f-49ab-bcdc-0985e596b955
Environment: Production

"Mouse Endoderm Project" needs to be re-ingested to correct linking of specimen to cell suspension. Go through Project Completion QA Checklist prior to re-ingest into production.

• Process QA of primary bundles
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Project UUID: 091cf39b-01bc-42e5-9437-f419a66c8a45
Project Title: Profiling of CD34+ cells from human bone marrow to understand hematopoiesis
Project Short Name: Human Hematopoietic Profiling
Submission UUID: 7dbcf5ae-f8d7-487c-a3d4-794d8639a1e2
Environment: Production

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Project UUID: abe1a013-af7a-45ed-8c26-f3793c24a1f4
Project Title: Reconstructing the human first trimester fetal-maternal interface using single cell transcriptomics
Project Short Name: KidneySingleCellAtlas
Submission UUID: d5410c6e-612d-421a-a66f-2de5e04dd050
Environment: Production

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Project UUID: f8aa201c-4ff1-45a4-890e-840d63459ca2
Project Title: Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease
Project Short Name: HumanColonicMesenchymeIBD
Submission UUID: c51efa69-a348-46d4-9997-c7a11915d53b
Environment: Production

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Project UUID: 027c51c6-0719-469f-a7f5-640fe57cbece
Project Title: Single Cell Transcriptomics of a Human Kidney Allograft Biopsy Defines a Diverse Inflammatory Response
Project Short Name: Kidney biopsy scRNA-seq
Submission UUID: 588281cb-93e2-4888-b75e-5cee5e39fc7f
Environment: Production

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Project UUID: f86f1ab4-1fbb-4510-ae35-3ffd752d4dfc
Project Title: A Single-Cell Transcriptomic Map of the Human and Mouse Pancreas Reveals Inter- and Intra-cell Population Structure
Project Short Name: HumanMousePancreas
Submission UUID: 7b4cd093-bfa5-477e-9c95-69bafc1cb6bf
Environment: Production

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Project UUID: 74b6d569-3b11-42ef-b6b1-a0454522b4a0
Project Title: 1.3 Million Brain Cells from E18 Mice
Project Short Name: 1M Neurons
Submission UUID: 064d36ca-ea4d-428f-b30f-0cf5e5350a9d
Environment: Production

"1M Neurons" needs to be re-ingested for re-bundling on the 10X data. Go through Project Completion QA Checklist prior to re-ingest into production.

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Project UUID: 116965f3-f094-4769-9d28-ae675c1b569c
Project Title: Single cell profiling of human induced dendritic cells generated by direct reprogramming of embryonic fibroblasts
Project Short Name: Reprogrammed_Dendritic_Cells
Submission UUID: 8c45a848-ab32-4928-8dd6-567b75eaf7e1
Environment: Production

"Reprogrammed_Dendritic_Cells" needs to be re-ingested to correct linking of specimen to cell suspension. Go through Project Completion QA Checklist prior to re-ingest into production.

• Process QA of bundles
• Metadata tsv validation: Run metadatatsv_validator.py