The goal of BioC19CWL is to ...
- cwltool
A python package cwltool
is required to be installed. The cwltool is the reference implementation of the Common Workflow Language, which is used to run the CWL scripts. Here is the instruction to install the tool. https://github.com/common-workflow-language/cwltool#install
- Docker
The Docker engine requirement is optional, but it can simplify software installation and management.
Hisat2
is required to be installed.