Ph.D. Student
Chinese Academy of Chinese Medical Science
hua-cm / chloroanno Goto Github PK
View Code? Open in Web Editor NEWPipeline for Chloroplast annotation
License: MIT License
Pipeline for Chloroplast annotation
License: MIT License
你好;我是新手在做注释,理解能力有限;第五步解决了模块问题;使用仍然报错,还不会太高的python技能,难解决报错
1、不懂说明文件中“(请不要保留无列名)”;这个具体什么意思呀
2、基因前缀可以随便设置吗?
eg:我整个文件内容:./hongshu.gff3 ./out.gff hongshu_chl 123 这是正确的嘛?
3、我使用就报错,新手确实不知道如何处理报错
Traceback (most recent call last):
File "../../gff2gff4GeSeq.py", line 118, in
change_gff(*row.to_list())
File "../../gff2gff4GeSeq.py", line 54, in change_gff
gene_type = gene.attributes['gene_biotype'][0]
File "/python3.8/site-packages/gffutils/attributes.py", line 63, in getitem
v = self._d[k]
KeyError: 'gene_biotype'
还望指教
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