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topy's Introduction

Topy - a tool for visualizing and analyzing retinotopic mapping data

This is a Mathematica package for analyzing retinotopic mapping data collected in the classical method: handmapped receptive fields drawn on a spherical screen. The package performs basic geometrical calculations based on spherical coordinates, and allows the researchers to explore the dataset easily. My colleagues and I have used this package to generate figures in a number of publications.

Examples:

Hadjidimitrakis et al. (2019) Topographic Organization of the 'Third-Tier' Dorsomedial Visual Cortex in the Macaque. Journal of Neuroscience 39, 5311-5325.

Yu et al (2018) Robust Visual Responses and Normal Retinotopy in Primate Lateral Geniculate Nucleus following Long-term Lesions of Striate Cortex. Journal of Neuroscience 38, 3955-3970.

The stylistic elements in Topy is flexity. You can visualize your data in many different ways:

How to use it?

  1. Move the Topy to a place that Mathematica can find, such as ~/Library/Mathematica/Applications
  2. Consult one of the scripts in demo/.

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