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awesome-ontology's Introduction

Awesome Ontology

A curated list of ontology things. Your contribution is welcome!

Contents

Ontology Editors

  • Eddy - A graphical editor for the specification and visualization of ontologies in Graphol format.
  • Fluent Editor - An award winning comprehensive tool for editing and manipulating complex ontologies that uses Controlled Natural Language.
  • OntoME - Designed for any object-oriented structured data model to build, manage and align your ontology, or to simply browse through the existing ontologies. (GitHub for issues)
  • OntoStudio (formerly OntoEdit) - A most widespread commercial modeling environment for creating and maintaining ontologies.
  • OWLGrEd - A UML Style Graphical Editor for OWL.
  • Protégé - A free, open-source ontology editor and framework for building intelligent systems.
  • Vitro - A general-purpose web-based ontology and instance editor with customizable public browsing.
  • VocBench and Semantic Turkey - VocBench is a web-based, multilingual, collaborative development platform for managing OWL ontologies, SKOS(/XL) thesauri, Ontolex-lemon lexicons and generic RDF datasets. Its backend, Semantic Turkey is a RDF service platform for Knowledge Management and Acquisition.
  • Termboard - A very simple graphical editor to create Terms and Relations. It can use ChatGPT, Google Bard or any other chatbot. Ideal for beginners wanting to make and share quick sketches.

Archived or inactive:

  • Apollo (last updated ~2005) - A user-friendly knowledge modelling application.
  • NeOn Toolkit (last updated 2011) - A state-of-the-art, open source multi-platform ontology engineering environment, which provides comprehensive support for the ontology engineering life-cycle.
  • Knoodl (last updated ~2017) - An ontology-driven "Distributed Information Management System" (DIMS) by Revelytix, Inc.
  • SWOOP (last updated 2007) - An OWL Ontology browser/editor that takes the standard Web browser as the basic UI paradigm.
  • TopBraid Composer Series (archived ~2021) - A powerful Integrated Development Environment (IDE) for implementing Knowledge Graph/Linked Data services by TopQuadrant, Inc.
  • WebODE (discontinued in 2006) - An extensible ontology-engineering suite based on an application server.

See also:

Ontology Utilities

  • LODE - Java ontology documentation generator to convert OWL ontologies into HTML human-readable pages.
  • OAK - The Ontology Access Kit, a python library and command line tool for ontologies.
  • obonet - Python library to convert OBO-formatted ontologies to networkx graphs.
  • OnToology - Online tool to automatically generate documentation and evaluation for Ontologies hosted on GitHub.
  • Ontospy - Python library and command-line interface for inspecting and visualizing RDF models.
  • OWLTools - Java API and command-line utilities on top of the OWL API.
  • pyLODE - Python ontology documentation generator inspired by LODE.
  • pyontutils - Python utilities for working with ontologies.
  • ROBOT - Java library and CLI tool for working with ontologies, particularly Open Biomedical Ontologies. It also provides a bridge to Python by Py4J.
  • WebVOWL - Web application for visualizing ontologies on the Web.
  • yamlpyowl - Python based YAML-to-OWL-converter.
  • owl-cli - Command line tool for ontology engineering (diagram generation, read/write documents in various formats and OWL DL reasoning).

Generic RDF tools:

  • Tarql - Python tool to turn CSV into RDF using SPARQL syntax.
  • VocPrez - Python tool (API and web front-end) for the read-only delivery system of SKOS vocabularies.

Datastore

  • SciGraph - Neo4j backed ontology store.

Languages

Archived or inactive:

See also:

Ontologies and Vocabularies

See also:

Upper-level Ontologies

Archived or inactive:

Mid-level Ontologies

Cross-domain Ontologies

Large

  • ConceptNet - An open, multilingual knowledge graph.
  • Cyc (OpenCyc/ResearchCyc) - A knowledge base which contains more than 630,000 concepts.
  • DBpedia - A crowd-sourced community effort to extract structured content from the information created in various Wikimedia projects.
  • KBpedia - A comprehensive knowledge structure for promoting data interoperability and knowledge-based artificial intelligence (KBAI). It combines Wikipedia, Wikidata, schema.org, DBpedia, GeoNames, OpenCyc, and UMBEL.
  • Mosaic Knowledge Graphs - ATOMIC + ConceptNet combination by AllenAI.
  • NELL ontology and knowledge base - An ontology developed by the Never-Ending Language Learning (NELL) project.
  • Wikidata - A free and open knowledge base that can be read and edited by both humans and machines. It contains more than 55,000,000 data items.
  • WordNet - A large lexical database of English. It consists of ~117,000 synsets (groups of synonyms).
  • YAGO - A huge semantic knowledge base, derived from Wikipedia WordNet and GeoNames. It has knowledge of more than 10 million (10,000,000) entities.
  • Xlore - A large-scale multilingual knowledge graph by structuring and integrating Chinese Wikipedia, English Wikipedia, French wikipedia, and Baidu Baike.

Without explicit classes:

Archived or inactive:

See also:

  • Open Multilingual Wordnet - A list of open wordnets in a variety of languages, all linked to the Princeton WordNet of English (PWN).

Small to Medium

Domain Ontologies

Biology

  • Gene Ontology (GO) - The world’s largest source of information on the functions of genes.
  • Uberon - All body parts across all animals.

Commerce

Community

Culture

  • CIDOC CRM (Conceptual Reference Model) - An ontology for cultural heritage information, which describes the explicit and implicit concepts and relations relevant to the documentation of cultural heritage.

Food and Drink

Geography

Humanities

See:

Legal

See:

News

  • rNews - An approved standard for using semantic markup to annotate news-specific metadata in HTML documents.

People

  • Friend Of A Friend (FOAF) - A computer language defining a dictionary of people-related terms that can be used in structured data.
  • vCard Ontology - An ontology for describing people and organizations. A mapping of the vCard specification (RFC6350) to RDF/OWL.

Vocabularies

A vocabulary is a set of terms for a language.

Alignment & Matching

  • AgreementMakerLight (AML) - Ontology matching system developed by LASIGE (FCUL, Portugal) in collaboration with the ADVIS Lab (UIC, USA).
  • LogMap - Highly scalable ontology matching system with "built-in" reasoning and inconsistency repair capabilities.
  • OntoEMMA - Ontology matcher by AllenAI.

See also:

  • Ontology Matching website - Hosting OM (International Workshop on Ontology Matching) and OAEI (Ontology Alignment Evaluation Initiative).
  • Alignment API - Ontology Alignment API specification. (implemented in Java)

Logics

A logic is a language with a proof theory (e.g., axioms and inference rules).

See also:

Reasoners

A reasoner is a program which infers explanatory or new facts and detects inconsistencies in ontology and knowledge base based on the logic associated.

  • CEL - A lightweight Description Logic (EL+) reasoner for large-scale biomedical ontologies. (Common Lisp+Java)
  • ELK - An ontology reasoner that aims to support the OWL 2 EL profile. (Java)
  • EYE - A reasoning engine which performs semibackward chaining and supports Euler paths. (Prolog)
  • FaCT++ - The new generation of the well-known FaCT OWL-DL reasoner which uses optimised tableaux algorithms. (C++)
  • Flora-2 (Ergo Lite) - A F-logic based reasoning system. (Prolog)
  • HyLAR - A rule-based incremental reasoner for the Web. (JavaScript)
  • jcel - A reasoner for the description logic EL+. (Java)
  • Openllet - An OWL DL reasoner build on top of Pellet 2. (Java)
  • OWL-RL - A simple implementation of the OWL2 RL Profile, as well as a basic RDFS inference, on top of RDFLib. (Python)
  • pyfactxx - Python bindings for upgraded FaCT reasoner and RDFLib integration. (Python/C++)
  • Racer - A knowledge representation system that implements a highly optimized tableau calculus for the description logic SRIQ(D). (Common Lisp+Java)
  • Whelk - A Scala OWL reasoner based on the algorithm implemented in ELK, using immutable data structures.

Archived or inactive:

  • cwm (last updated 2005) - A forward chaining RDF reasoner. (Python)
  • HermiT (last updated ~2013) - The first publicly-available OWL reasoner based on a novel “hypertableau” calculus which provides much more efficient reasoning than any previously-known algorithm. (Java)
  • Hoolet (last updated 2004) - An implementation of an OWL-DL reasoner that uses a first order prover. It uses the Vampire prover for reasoning purposes. Other reasoners could also be used; communication with the reasoner is via the TPTP format which is understood by a number of theorem provers.
  • KAON2 reasoner (last updated 2008) - A DL reasoner for the SHIQ(D) subset of OWL-DL, based on novel algorithms which reduce a SHIQ(D) knowledge base to a disjunctive datalog program. (proprietary, Java)
  • Pellet 2 (last updated ~2015) - An open source OWL DL reasoner for Java. Pellet 3 (proprietary) is embedded in the Stardog platform. (Java)

See also:

Querying

  • DL Query (class expression) - A query language supported by the DL Query tab plugin for Protégé based on the Manchester OWL syntax.
  • SPARQL 1.1 - A set of specifications that provide languages and protocols to query and manipulate RDF graph content on the Web or in an RDF store.
    • SPARQL-DL - A substantial subset of SPARQL that can be covered by the standard reasoning services OWL-DL reasoners provide. It is implemented in the Pellet reasoner.
    • SPARQL-OWL algorithm - A sound and complete algorithm for answering SPARQL-OWL, SPARQL queries under the OWL 2 Direct Semantics entailment regime.
    • SPARQL* - An RDF*-aware extension of the RDF query language SPARQL.

See also:

Rule and Schema Definition

Archived or inactive:

Programming

See also: Ontology Utilities section.

OWL-aware libraries

  • Apache Jena Ontology API -
  • FunOWL - A Python library for working with OWL (functional syntax).
  • Horned OWL - An OWL Rust library
  • ontor - Ontology editing library built on Owlready2. (Python)
  • OWL API - A Java API for creating, manipulating and serializing OWL Ontologies.
  • Owlready2 - A module for ontology-oriented programming in Python.
  • Tawny-OWL - A domain-specific language and library for OWL ontologies in Clojure.

Archived or inactive:

  • OPPL - An abstract formalism that allows for manipulating ontologies written in OWL.

Communities

Related

Archived or inactive:

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