Comments (2)
Hi,
I wanted to compare IOGA to other organellar assemblers. However, I have encountered the same error. Has the issue been solved?
~/Prog/IOGA-master/IOGA.py -r ref.fasta -1 F.fastq -2 R.fastq
/IOGA-master/IOGA_config.json
/IOGA-master/IOGA_config.json
[None] Quality trimming with BBduk
Traceback (most recent call last):
File "/IOGA-master/IOGA.py", line 432, in
main(args.reference,args.name,args.forward,args.reverse,args.threads,args.insertsize,args.maxrounds,args.verbose)
File "/IOGA-master/IOGA.py", line 377, in main
source,FP,RP,final_iteration = IOGA_loop(name,ref,forward,reverse,insertsize,threads,maxrounds)
File "/IOGA-master/IOGA.py", line 323, in IOGA_loop
if len(name.split('/')) == 1:
AttributeError: 'NoneType' object has no attribute 'split'
from ioga.
This error occurred when the name option (-n, --name) was not defined.
I have added a default option (IOGA_RUN), so the problem should be fixed.
Please do a git pull to get the latest version.
from ioga.
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from ioga.