Type: User
Company: Interfaculty Bioinformatics Unit, University of Bern
Bio: Bioinformatician and Data Scientist.
Expertise in omics applications (e.g. metagenomics, RNA-Seq, scRNA-Seq) using CLI, R, Python, Snakemake, Bash etc.
Location: Bern
makrez's Projects
A collection of bioinformatics tools using python, R and bash.
Short machine learning project
Snakemake pipeline for assembling and annotating bacterial genomes from NGS paired-end data.
This analysis is published in: Howard C, Hill E, Kreuzer M, Mali P, Masiero E, Slater A, Sgamma T (2019) DNA Authentication of St John’s Wort (Hypericum perforatum L.) Commercial Products Targeting the ITS Region; Genes 10(4), 286 This file consists of the metabarcoding analysis after the querying the reads to the NCBI database. The blast output was parsed with MEGAN. The starting data is the file __specieslist.ncbi.txt__.
BC2Bio assembly exercise
Machine Learning for Computer Vision course
Repository to host tool-specific module files for the Nextflow DSL2 community!
Code for the manuscript
Test data to be used for automated testing with the nf-core pipelines
Code and files for the main nf-core website.