3D visualization of volumetric data (e.g. segmentations) about vizarr HOT 3 CLOSED

Thanks for the question. 3D visualization is a newer feature that we've released in Viv that isn't supported for multiscale volumes or volumes where the data are "chunked" with a chunksize > 1 along the z dimension. Therefore only a subset of Zarr-based volumes are supported by Viv, whereas all OME-TIFF volumes are supported (since for OME-TIFF, chunksize == 1 for all non-XY axes and the format is not suitable for multiscale 3D).

We plan to add support for 3D in Vizarr when we can handle a larger subset of Zarr-based volumes in Viv, as well as when the OME-NGFF metadata for spatial transformations is better defined.

from vizarr.

Hello, thanks for taking interest in vizarr! Unfortunately vizarr does not currently support 3D visualization of volumetric data. Some more in-depth discussion can be found in:

• #60 (comment)

from vizarr.

Hello, thank you for the response! If I may ask, why you decided to not support 3D visualisation, given that Viv do support it via raycasting?

from vizarr.