RaptRanker is a software for RNA aptamer selection from HT-SELEX experiment data based on local sequence and structure information.

If you have any issues or recommendations, please feel free to open a ticket.

RaptRanker needs C++ compiler, CMake, and Boost Libraries. We checked under the following versions.

• OS : CentOS 7.5.1804, macOS Mojave 10.14.5
• C++ compiler : g++ 5.5.0, clang 10.0.1
• CMake : 3.13.4, 3.14.2
• Boost : 1.69.0, 1.71.0

Download or clone the latest version sources, and build with CMake.

git clone https://github.com/hmdlab/RaptRanker.git
cd RaptRanker
mkdir build
cd build
cmake ..
make

$ warning: This header is deprecated. Use <boost/integer/integer_log2.hpp> instead. may occur during make. This warning occurs in third-party source code. For now RaptRanker works, so please ignore it.

The executable file will be complied as RaptRanker/bin/RaptRanker. RaptRanker input parameters with a json file. To work RaptRanker, create a parameter file and call

path/to/RaptRanker/bin/RaptRanker parameter.json

For the detail of parameters, please check wiki.