hjalti / mossum Goto Github PK

Traceback (most recent call last):
  File "/usr/local/lib/python3.7/site-packages/pydot.py", line 1915, in create
    working_dir=tmp_dir,
  File "/usr/local/lib/python3.7/site-packages/pydot.py", line 136, in call_graphviz
    **kwargs
  File "/usr/local/lib/python3.7/subprocess.py", line 800, in __init__
    restore_signals, start_new_session)
  File "/usr/local/lib/python3.7/subprocess.py", line 1551, in _execute_child
    raise child_exception_type(errno_num, err_msg, err_filename)
FileNotFoundError: [Errno 2] No such file or directory: 'dot': 'dot'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/bin/mossum", line 9, in <module>
    mossum.main()
  File "/usr/local/lib/python3.7/site-packages/mossum/mossum.py", line 291, in main
    image(res, i+1)
  File "/usr/local/lib/python3.7/site-packages/mossum/mossum.py", line 262, in image
    graph.write(filename, format=args.format)
  File "/usr/local/lib/python3.7/site-packages/pydot.py", line 1817, in write
    s = self.create(prog, format, encoding=encoding)
  File "/usr/local/lib/python3.7/site-packages/pydot.py", line 1922, in create
    raise OSError(*args)
FileNotFoundError: [Errno 2] "dot" not found in path.

$ mossum http://moss.stanford.edu/results/XYZ
Generating image for moss_02-03-2018_223646
DONE

Traceback (most recent call last):
  File "/Library/Frameworks/Python.framework/Versions/3.10/bin//mossum", line 9, in <module>
    mossum.main()
  File "/Library/Frameworks/Python.framework/Versions/3.10/lib/python3.10/site-packages/mossum/mossum.py", line 294, in main
    image(res, i+1, label=args.title)
  File "/Library/Frameworks/Python.framework/Versions/3.10/lib/python3.10/site-packages/mossum/mossum.py", line 266, in image
    graph.write(filename, format=args.format)
  File "/Library/Frameworks/Python.framework/Versions/3.10/lib/python3.10/site-packages/pydot/core.py", line 1662, in write
    s = self.create(prog, format, encoding=encoding)
  File "/Library/Frameworks/Python.framework/Versions/3.10/lib/python3.10/site-packages/pydot/core.py", line 1753, in create
    stdout_data, stderr_data, process = call_graphviz(
  File "/Library/Frameworks/Python.framework/Versions/3.10/lib/python3.10/site-packages/pydot/core.py", line 133, in call_graphviz
    process = subprocess.Popen(
  File "/Library/Frameworks/Python.framework/Versions/3.10/lib/python3.10/subprocess.py", line 971, in __init__
    self._execute_child(args, executable, preexec_fn, close_fds,
  File "/Library/Frameworks/Python.framework/Versions/3.10/lib/python3.10/subprocess.py", line 1863, in _execute_child
    raise child_exception_type(errno_num, err_msg, err_filename)
PermissionError: [Errno 13] Permission denied: 'dot'

% pip install git+https://github.com/hjalti/mossum@master
Collecting git+https://github.com/hjalti/mossum@master
  Cloning https://github.com/hjalti/mossum (to master) to /private/var/folders/yf/s_886ncd4qv743xbq14s6ck80000gp/T/pip-xVZQI4-build
Requirement already satisfied: beautifulsoup4>=4.3.2 in /Library/Python/2.7/site-packages (from mossum==0.1.3)
Collecting Faker>=0.4.2 (from mossum==0.1.3)
  Using cached Faker-0.8.11-py2.py3-none-any.whl
Collecting html5lib>=0.999 (from mossum==0.1.3)
  Using cached html5lib-1.0.1-py2.py3-none-any.whl

...

Collecting scandir; python_version < "3.5" (from pathlib2; python_version == "2.7" or python_version == "3.3"->ipython>=2.3.0->mossum==0.1.3)
  Using cached scandir-1.6.tar.gz
Building wheels for collected packages: scandir
  Running setup.py bdist_wheel for scandir ... error
  Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/private/var/folders/yf/s_886ncd4qv743xbq14s6ck80000gp/T/pip-build-6HC5Fj/scandir/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /var/folders/yf/s_886ncd4qv743xbq14s6ck80000gp/T/tmpChGnhVpip-wheel- --python-tag cp27:
  running bdist_wheel
  running build
  running build_py
  creating build
  creating build/lib.macosx-10.13-intel-2.7
  copying scandir.py -> build/lib.macosx-10.13-intel-2.7
  running build_ext
  building '_scandir' extension
  creating build/temp.macosx-10.13-intel-2.7
  cc -fno-strict-aliasing -fno-common -dynamic -arch x86_64 -arch i386 -g -Os -pipe -fno-common -fno-strict-aliasing -fwrapv -DENABLE_DTRACE -DMACOSX -DNDEBUG -Wall -Wstrict-prototypes -Wshorten-64-to-32 -DNDEBUG -g -fwrapv -Os -Wall -Wstrict-prototypes -DENABLE_DTRACE -arch i386 -arch x86_64 -pipe -I/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c _scandir.c -o build/temp.macosx-10.13-intel-2.7/_scandir.o
  <built-in>:0: error: Unknown value ‘10.13’ of -mmacosx-version-min
  _scandir.c: In function ‘_pystat_fromstructstat’:
  _scandir.c:625: error: ‘struct stat’ has no member named ‘st_birthtimespec’
  _scandir.c:627: error: ‘struct stat’ has no member named ‘st_birthtimespec’
  <built-in>:0: error: Unknown value ‘10.13’ of -mmacosx-version-min
  _scandir.c: In function ‘_pystat_fromstructstat’:
  _scandir.c:625: error: ‘struct stat’ has no member named ‘st_birthtimespec’
  _scandir.c:627: error: ‘struct stat’ has no member named ‘st_birthtimespec’
  fatal error: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/lipo: can't open input file: /var/folders/yf/s_886ncd4qv743xbq14s6ck80000gp/T//ccra9I0N.out (No such file or directory)
  error: command 'cc' failed with exit status 1
  
  ----------------------------------------
  Failed building wheel for scandir
  Running setup.py clean for scandir
Failed to build scandir