Name: Heru Handika
Type: User
Bio: I study rats and shrews in montane forests of SE Asia and develop tools to make evolutionary studies more accessible and inclusive.
Twitter: heru_hdk
Location: Baton Rouge, USA
Blog: https://hhandika.com/
Heru Handika's Projects
An open platform for a digital field guide
Testing different ways of reading files in rust.
R package using segul ultrafast genomic tools
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
Access Rust code from other programming languages
SangerNeverDIE: Fast Sanger Sequencing Tools
A GUI version of the SEGUL phylogenomic tool
An ultrafast and memory efficient tool for phylogenomics
Benchmarking segul performance
A bioconda recipe for SEGUL. Use as reference only.
Segul Documentation
Access SEGUL using C FFI
Finds sequencing reads within deeply nested directories.
A simple, high-performance, single executable quality control CLI app for high-throughput sequencing data
Data analyses for non-overlapping sliding windows
Batch assembling next-gen sequencing reads using SPAdes.
Statistics from scratch written in multiple programming languages. ๐งช
SUMAC: Python package to data-mine GenBank and construct phylogenetic supermatrices
Taxonomic generator
A cross-platform camera trap data management and image analysis app
API for trapir camera trap image analysis app
Fast command line application for camera trap image analyses
A simple cli app for genomic lab work.
An ULtrafast, scaLable, Accessible, and Reproducible phylogenomic pipeline
Random utility functions
Data wrangling with Rust
A single excutable pipeline for phylogenomics