An R package designed to link metabolites IDs from different Metabolome databases with eachother in a step to resolve ambiguity and standardize metabolites representation and annotation. Currently the package supports resolving IDs for the following databases:

• Human Metabolome Database (HMDB)
• Chemical Entities of Biological Interest (ChEBI)
• PubChem
• Kyoto Encyclopedia of Genes and Genomes (KEGG)
• Lipidomics Gateway (LipidMaps)

For any questions or issues please use the Issues in github or contact Rajmund Casombordi or Sara Younes.

library(devtools) install_github("shizidushu/hfun","komorowskilab/metafetcher")

MetaFetcheR is implemented in R

library(devtools)
install_github("shizidushu/hfun","komorowskilab/metafetcher")

See the documentation.

• Rajmund Casombordi @oboforty
• Sara Yones [email protected] @SaraYones
• Klev Diamanti @klevdiamanti