The adam-plugins's discuss from heuermh

adam-plugins's Issues

Register your spark package

You have a dependency on Apache Spark. You can register your package at
http://spark-packages.org/register.
It's "[a] community index of packages for Apache Spark."

Running against adam built for scala version 2.11 does not work

As might be expected, running adam-plugins-0.16.1-SNAPSHOT.jar against adam built for scala version 2.11 does not work

$ ADDL_JARS=adam-plugins-0.16.1-SNAPSHOT.jar bin/adam-submit \
>         plugin com.github.heuermh.adam.plugins.CountAlignments \
>         adam-core/src/test/resources/small.sam
Exception in thread "main" java.lang.NoSuchMethodError: scala.Predef$.$conforms()Lscala/Predef$$less$colon$less;
    at org.bdgenomics.adam.cli.ADAMMain$.main(ADAMMain.scala:104)
    at org.bdgenomics.adam.cli.ADAMMain.main(ADAMMain.scala)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:606)
    at org.apache.spark.deploy.SparkSubmit$.org$apache$spark$deploy$SparkSubmit$$runMain(SparkSubmit.scala:569)
    at org.apache.spark.deploy.SparkSubmit$.doRunMain$1(SparkSubmit.scala:166)
    at org.apache.spark.deploy.SparkSubmit$.submit(SparkSubmit.scala:189)
    at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:110)
    at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)

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