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lobico

long_read_tools

A catalogue of available long read sequencing data analysis tools

methhaplo

allele specific DNA methylation haplotype region

methimpute

Impute DNA methylation from WGBS data.

methylation

methylseq

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel

mrcnn

MRCNN provides a deep-learning method for prediction of single-CpG-site methylation level with only local DNA sequences. It is implemented by deep learning library Tensorflow (version of tensorflow-gpu 1.2.0). It can be used for regression of continuous value of methylation and at present it is used for human methylation.

nlp

nlp-practice-program

力求囊括主流NLP模型练手项目，不断更新中

oil-gwas

paddlehub

Awesome pre-trained models toolkit based on PaddlePaddle.（180+ models including Image, Text, Audio and Video with Easy Inference & Serving deployment)

pathomicfusion

Fusing Histology and Genomics via Deep Learning.

pixy

Software for painlessly estimating average nucleotide diversity within and between populations

pomona

python

All Algorithms implemented in Python

python-1

最良心的 Python 教程：

python-100-days

Python - 100天从新手到大师

ratemysupervisor

永久免费开源的导师评价数据、数据爬虫、无需编程基础的展示网页以及新信息补充平台

recommender-system-with-tf2.0

Recurrence the recommender paper with Tensorflow2.0

references

regulatory-prediction

Code and Data to accompany "Dilated Convolutions for Modeling Long-Distance Genomic Dependencies", presented at the ICML 2017 Workshop on Computational Biology

residual-attention-network

Keras Implementation Residual Attention Network

rticles

LaTeX Journal Article Templates for R Markdown

samosa

sclearn

scLearn：Learning for single cell assignment

selene

a framework for training sequence-level deep learning networks

shap

A game theoretic approach to explain the output of any machine learning model.

smalr

SMALR: a framework for single-molecule level interrogation of the methylation status of SMRT reads.

smrter

Single Molecule Real Time sequencing Epigenetic Refinement

statistical-learning-method_code

手写实现李航《统计学习方法》书中全部算法