Comments (6)
Hi CadotB, you're right. We currently save the predictions as "predicted_01.tif", "predicted_02.tif" etc. disregarding of the original filenames. I agree this is not great so let me add this to the list of additions for the next release and we'll take this! I think we could go for what you're suggesting with a prefix or a suffix stating it's the prediction file.
In the meantime, I hope it's not too inconvenient for you to rename the files manually. We'll be working on a fix asap ! Thanks again for raising this issue.
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Hi CadotB, I have taken a look at the code and fixed the issue already actually. So this fix will definitely be included in the next release. I suggest you keep an eye on the release page in the next few days (it will be release v1.2).
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Awesome Romain! I asked it because I have to cut my pics in mosaics so they can be analyzed, but then to reconstruct the full image, I need to keep somehow similar names. Thanks for the upgrade.
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Hi CadotB, great! Out of curiosity, why do you need to cut your pictures? Did you have issues with image size trying to use the full image in U-net?
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Yes, when I was doing the training, it was not working with images above 1024x1024px. I opened an issue before about that and lucpaul told me this is probably one of the limitations of google collab.
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OK, gotcha! Thanks for the quick reply.
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Related Issues (20)
- CARE_2D training termination HOT 2
- StarDist_2D -- on official sample data prediction fails with "TypeError" inside "big.py" HOT 3
- StarDist 2D- Encountering an error while trying to export the model to Bioimage model zoo format(Section 5.3.) HOT 5
- StarDist 2D- Encountering error while exporting the model to BioImage Model Zoo format HOT 1
- 2D Stardist keeps crashing when Generating prediction(s) from unseen dataset HOT 1
- Issue with training 3D U-Net using ZeroCostDL4Mic: validation set HOT 2
- Dependencies txt files for local GPU use HOT 2
- Please mark YoloV2 as nonfunctional HOT 1
- Unable to use the TF_SavedModel in Stardist 2D plugin in Fiji HOT 2
- [Feature] Full notebook CI testing HOT 2
- ModuleNotFoundError: No module named 'splinegenerator' HOT 3
- MaskRCNN - Fiji macro HOT 1
- U-Net 2D ValueError when preparing data for training HOT 1
- Retain the image size of output for pix2pix model HOT 1
- installation fails in Stardist 3D HOT 2
- 3D unet: Problem with Section 5.4, cannot download model as bioImage HOT 8
- UNET3D prediction problem HOT 8
- Error: pix2pix Section 5.2 Run Quality Control HOT 1
- Fail in installing StarDist_3D_ZeroCostDL4Mic on GoogleColab HOT 1
- Enhancement Request: Pix2Pix Notebook - Export Trained Model to bioimage.io and deepImageJ Compatibility HOT 1
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