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3d_designs

This repository is a placeholder for designs of 3D printed parts (STL files). Some were made with Alibre Pro and some were made with OpenSCAD. When OpenSCAD was used, I share the codes, these can be easily modified for own purposes.

f3-cmm-flim-analysis

This ImageJ macro code provides a fast and robust way to analyse FLIM (TCSPC) image data in ImageJ (or FiJi). The method is based on an extension of the centre-of-mass method (CMM) which uses the first moment to estimate the lifetime from a decay.

ijmovie

ipls-workshop

Setup instructions for the IPLS workshop April 2021

milesim

This code performs the particle detection, classification (Machine Learning analysis) and structural analysis of virus imaging dataset as described in our manuscript.

model_based_analysis_virus_particles

nanoj-squirrel

SQUIRREL software package

opencl-decon

Deconvolution in ImageJ via OpenCL [UNMAINTAINED]

pythondatasciencehandbook

Python Data Science Handbook: full text in Jupyter Notebooks

tcspc-image-simulation

This code provides an easy way to simulate TCSPC image data which includes effect of the IRF, background after-pulsing and laser repetition rate. Images are saved as OME.tiff using Bioformat.

uc2-git

Respository for Open-Science modular microscope system.

zcdl4_binder