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code-ae

Coherent Deconfounding Autoencoder (CODE-AE) can extract both common biological signals shared by incoherent samples and private representations unique to each data set, transfer knowledge learned from cell line data to tissue data, and separate confounding factors from them

coessentiality

Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)

colonic-microbiota-is-associated-with-inflammation-and-host-epigenomic-alterations-in-ibd

Colonic microbiota is associated with inflammation and host epigenomic alterations in inflammatory bowel disease

colorectal_histology_mnist

Classification of colorectal cancer histology into 8 classes

covidip_analysis

cox-regression

crc_scrnaseq

crowdsourcingdataset-amgadetal2019

Use this to download all elements of the dataset described in: Amgad M, Elfandy H, ..., Gutman DA, Cooper LAD. Structured crowdsourcing enables convolutional segmentation of histology images. Bioinformatics. 2019. doi: 10.1093/bioinformatics/btz083

curatedtbdata

Curation of existing TB gene expression datasets

darts

Deep-learning Augmented RNA-seq analysis of Transcript Splicing

dash-bio

Open-source bioinformatics components for Dash

datasciencecoursera

Repo for Coursera's Data Science Specialization.

deepdia

Using deep learning to generate in silico spectral libraries for data-independent acquisition analysis. You can also use the online service powered by Omicsolution.

deeppathology-crc

Detection of pathological colorectal cancer based on deep learning

doherty_cdprediction_mbio_2017

repo for the paper

dox

Determining the genetic basis of anthracycline-cardiotoxicity by molecular response QTL mapping in induced cardiomyocytes

dsa-wsi-deid

A workflow for redacting PHI from whole slide images (WSI) based on the Digital Slide Archive.

elefhant-shiny

ELeFHAnt: A supervised machine learning approach for label harmonization and annotation of single cell RNA-seq data (Shiny App)

evatlas-portal

Extracellular Vesicle Atlas data portal

evo-devo

fastai_xla_extensions

A Python package to allow fastai to run on TPUs using Pytorch-XLA

fastbook

The fastai book, published as Jupyter Notebooks

file

free

翻墙、免费翻墙、免费科学上网、免费节点、免费梯子、免费ss/v2ray/trojan节点、蓝灯、谷歌商店、翻墙梯子

gans-slides-code-paper

Tutorial introduction slides to GANs. Code implementations and links of relevant papers.

genavi

gene_expression_bimodality

genobias

geomnet

Examples and data for geom_net

gleason_cnn