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assemble

bsseeker2

A versatile aligning pipeline for bisulfite sequencing data

flashfry

FlashFry: The rapid CRISPR characterization tool

hotspot

Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.

microbiomestatplot

Interpretation and visualization of microbiome charts

pyscenic

pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.

sorghum-omics-dataset-analysis

wheat-spike-qtl-filtering

systematically identify genes involved in spike trait formation by integrating the information of genomic variation and gene regulatory network (GRN) controlling young spike development in wheat

wheat_singlecellatlas

Codes for Asymmetric gene expression and cell type specific regulatory networks in root of bread wheat revealed by single cell multiomics analysis

wheat_vernalization_regulation_network

wheatatac

A pipeline integrated data analysis and valuation for wheat ATAC-seq

work

just for work