Comments (3)
tanaymeh
commented on August 13, 2024
3
Thanks for the reply @exnx, I opened an Issue and will be opening a PR soon. Let's make this work!
huggingface/transformers#24659
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exnx
commented on August 13, 2024
1
Hi heytanay, it’s not already there, and that would be amazing if you wanted to add it! We’re definitely up for supporting where we can, clarification, pointers, sharp bits if you need. Thanks so so much!!!
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exnx
commented on August 13, 2024
Closing this due to stale issue + someone from Huggingface is actively working porting over HyenaDNA to their library!
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Related Issues (20)
- Pretraining runtimes from the paper HOT 1
- hyenaDNA for regression? HOT 1
- How to define which dataset to use in command?
- The tokenizer's bug in Huggingface HOT 1
- Predicting probability vectors of equal length to input sequence
- How to recreate the result of DNABERT in paper HOT 1
- How to convert the batch cell from the GenomicBenchmarks data to user data? CUDA memory overload if running "Single example" cell multiple times to produce embeddings.
- How to pre-train on custom dataset using hyena-dna
- need to swap layer norm op for triton-based layer norm? HOT 2
- Reproducing the HyenaDNA results on NT Benchmarks
- Running with standard Huggingface config and trainer files does not give optimal results
- The default for pretrained_model_path in config files is a personal directory
- Bugs when I try to access the embeddings HOT 3
- Question: How to generate DNA sequence or sequence embeddings based on own bed file
- How can I access the dataset--genomic_benchmark I got timeout issue
- Failure to reproduce the hyenaDNA reported results on NT tasks. HURRY! HURRY HURRY
- Symbol lookup error
- Error when Resuming pre-training
- Training loss becomes NAN during pretraining HOT 1
- Questions about pre-training with multiple sequences HOT 1
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