Comments (1)
We follow the procedure that Enformer uses in retrieving train/test intervals from Basenji on the reference genome. Basenji hosts the data (the intervals), yes. The HG38 file itself is public, and can be retrieved from many places.
Sorry, we don't host the data, but it must cost just cents, or a couple of dollars with a GCP account to download. Using predefined intervals (from Enformer/basenji) is just something we chose to do, but there's nothing wrong with just sampling randomly from the HG38 fasta file, in which case you don't need the Enformer/Basenji intervals.
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Related Issues (20)
- Predicting probability vectors of equal length to input sequence
- How to recreate the result of DNABERT in paper HOT 1
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- How to pre-train on custom dataset using hyena-dna
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- Question: How to generate DNA sequence or sequence embeddings based on own bed file
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- Failure to reproduce the hyenaDNA reported results on NT tasks. HURRY! HURRY HURRY
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